1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttattttcttgggcatattgatgttaaaagggttctgatgttcaacattaaggggttgtgatgaagtaattcaaatcataaacagatgttatgttggcagGTAGCTGAGCATTATGAGCAGGTGATTGCGACTGATGTGAGCGAAGCCCAACTGAAATGTGCCATTCCACATCCCCGGGTCAAATACCTTCACACCCCCT
species | Vitis vinifera |
transcript | Vv06s0009g01530.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACTCTTTGGCTTGGGATGTCGGCACCGGCAACGGTCAAGCCGCTCTCGGT GTAGCTGAGCATTATGAGCAGGTGATTGCGACTGATGTGAGCGAAGCCCAAEST: gi|71875007|gb|DT024062.1|DT024062
genomic: ACTCTTTGGCTTGGGATGTCGGCACCGGCAACGGTCAAGCCGCTCTCGGTgtcagtcctt ... atgttggcagGTAGCTGAGCATTATGAGCAGGTGATTGCGACTGATGTGAGCGAAGCCCAA
EST: GCTCTTTGGCTTGGGATGTCGGCACCGGCAACGGTCAAGCCGCTCTCGGT GTAGCTGAGCATTATGAGCAGGTGATTGCGACTGATGTGAGCGAAGCCCAAEST: gi|77584864|gb|DV221512.1|DV221512
genomic: ACTCTTTGGCTTGGGATGTCGGCACCGGCAACGGTCAAGCCGCTCTCGGTgtcagtcctt ... atgttggcagGTAGCTGAGCATTATGAGCAGGTGATTGCGACTGATGTGAGCGAAGCCCAA
EST: ACTCTTTGGCTTGGGATGTCGGCACCGGCAACGGTCAAGCCGCTCTCGGT GTAGCTGAGCATTATGAGCAGGTGATTGCGACTGATGTGAGCGAAGCCCAAEST: gi|71874130|gb|DT023185.1|DT023185
genomic: ACTCTTTGGCTTGGGATGTCGGCACCGGCAACGGTCAAGCCGCTCTCGGTgtcagtcctt ... atgttggcagGTAGCTGAGCATTATGAGCAGGTGATTGCGACTGATGTGAGCGAAGCCCAA
EST: ACTCTTTGGCTTGGGATGTCGGCACCGGCAACGGTCAAGCCGCTCTCGGT GTAGCTGAGCATTATGAGCAGGTGATTGCGACTGATGTGAGCGAAGCCCAA
genomic: ACTCTTTGGCTTGGGATGTCGGCACCGGCAACGGTCAAGCCGCTCTCGGTgtcagtcctt ... atgttggcagGTAGCTGAGCATTATGAGCAGGTGATTGCGACTGATGTGAGCGAAGCCCAA
cattaaggggttgtgatgaagtaattcaaatcataaacagatgttatgttggcagGTAGCTGAGCATTATGAGCAGGTGATTGCGACTGATGTGAGCGAAGCCCAACTGAAATGTGCCATTCCACATCCCCGGGTCAAATACCTTCACACCCCCT
taattcaaatcataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttattttcttgggcatattgatgttaaaagggttctgatgttcaacattaaggggttgtgatgaagtaattcaaatcataaacagatgttatgttggcagGTAGCTGAGCATTATGAGCAGGTGATTGCGACTGATGTGAGCGAAGCCCAACTGAAATGTGCCATTCCACATCCCCGGGTCAAATACCTTCACACCCCCT
- - -ttcttgg
- - - - - - - - - - - - -aaaaggg
- - - - - - - - - - - - - - - - - ctgatgt
- - - - - - - - - - - - - - - - - - - - - -aacattaa
- - - - - - - - - - - - - - - - - - - - - - - - - -ggggttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aattcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cataaac