Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggttttcctcgaaaatttcacttttcaatcttgcttgctatcatttctcaccgatttttttggtaattgtgtttttgcagACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAG

Basic information

species Vitis vinifera
transcript Vv06s0004g07940.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g07940.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os01g60790.1 (Oryza sativa), 3'ss of exon 1
gtgaggttttcct--cgaaaatttcacttttcaatc---ttgcttgctatcatttctcaccgatttttttggtaattgtgtttttgcagACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAG
|| |||  || ||  |  |   || ||   |  ||    ||||  | |          || ||  | | |  |   ||  |    |||||| ||||||||  | ||||| || |||||||||||||| |||||||||||||||| ||| |||||||||||||| | ||| |||||||| |||
gtaaggccttgcttccctatgcttaacgcctagattgctttgcgggattcagcgctgaactgacctctcttcttgctgcatcggcgcagACCTTCAAGCGCCGCAATGGCGGCCGCAACAAGCACGGTCGCGGCCACGTCAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAG

upper sequence: Vv06s0004g07940.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os05g39960.2 (Oryza sativa), 3'ss of exon 1
--------------------------------------------gtgaggttttcctcgaaaatttcactttt--caatcttgcttgctatcatttctcaccgatttttttggtaattgtgtttttgcagACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAG
                                            | |  |    | |||     |||   ||   |  ||   ||  |  | | | |   | ||||  |||  |  ||      | |||||| |||||||| ||||| || || ||||||||||| ||||||||||| || |||| ||| |||||||||||||| | ||| |||||||| |||
gtaaggagctcgccgcttccggatccaccctagccgccgcggcggcggcggccgcttcggcgtcttcttcttctccgctcaatctcccggttagtcccttctgattggtttcctcctttc--cctcgcagACCTTCAAGCGCAGGAACGGCGGCCGCAACAAGCATGGCCGCGGCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAG

upper sequence: Vv06s0004g07940.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM5G899149_T02 (Zea mays), 3'ss of exon 1
gtgaggttttcctcgaaaatttcacttttcaatcttgcttgctatcatttctcaccgatttttttggtaattgtgtttttgcagACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAG-------
|||||   ||| |||| |    || | | |  ||| ||   |  |    ||| |||  | || |||     | ||     ||||||||||||||| |||||||| || |||||||||||||| |||||||||||||||| ||| |||||||||||||| | ||| |||||||| |||       
gtgag---ttcttcgaga---ccaatctcccttctcgccgacgttgccgtctaacctttgttgttgtctggt-tgccgccgcagACGTTCAAGCGGAGGAATGGCGGACGCAACAAGCACGGGCGCGGCCACGTCAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGGTAACAC

upper sequence: Vv06s0004g07940.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM5G899149_T01 (Zea mays), 3'ss of exon 1
gtgaggttttcctcgaaaatttcacttttcaatcttgcttgctatcatttctcaccgatttttttggtaattgtgtttttgcagACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAG
|||||   ||| |||| |    || | | |  ||| ||   |  |    ||| |||  | || |||     | ||     ||||||||||||||| |||||||| || |||||||||||||| |||||||||||||||| ||| |||||||||||||| | ||| |||||||| |||
gtgag---ttcttcgaga---ccaatctcccttctcgccgacgttgccgtctaacctttgttgttgtctggt-tgccgccgcagACGTTCAAGCGGAGGAATGGCGGACGCAACAAGCACGGGCGCGGCCACGTCAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAG

upper sequence: Vv06s0004g07940.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G129015_T02 (Zea mays), 3'ss of exon 1
gtgaggttttcctcgaaaatttcacttttcaatcttgctt-gctatcatt----tctcaccgatttttttggtaattgtgttt-ttgcagACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAG
|||||  | ||   ||  || ||  |  ||  ||  || | ||   |  |    ||| |||  || ||||| |  ||||| ||   ||||||||||||||| ||||| || || |||||||||||||| |||||||||||||||| ||| |||||||||||||| | ||| ||||| || |||
gtgag-ctatcggagaccatctccgtcctccgtcacgcctcgccgccgctgctgtctaaccctttcttttgttggttgtggttgccgcagACGTTCAAGCGGAGGAACGGCGGACGCAACAAGCACGGGCGCGGCCACGTCAAGTACATACGCTGCTCCAACTGCGCCAAGTGCTGTCCAAAG

upper sequence: Vv06s0004g07940.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM5G827266_T03 (Zea mays), 3'ss of exon 1
gtgaggttttcct----cgaaaatttcacttttcaatct-tgcttgc---tatcatttctcaccgatttttttggtaattgtgtttttgcagACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAG
| |||   |  |     |  || ||  |  || |   || ||| ||    | ||   ||| | | |||||  |     || | | |  |||||| ||||||||  | || || || ||||||||||| |||||||| |||||||||| ||| || ||||| ||||| | ||| |||||||| |||
gcgagtcctaaccaagcctgaagttcgatcttcctccctgtgcatgtacatctcgaatctaatccattttactccctgttctctctccgcagACCTTCAAGCGCCGCAACGGCGGCCGCAACAAGCATGGCCGCGGTCACGTCAAGTACATCCGGTGCTCAAACTGCGCCAAGTGCTGCCCCAAG

upper sequence: Vv06s0004g07940.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA04G39940.1 (Glycine max), 3'ss of exon 1
gt-gaggttttcctcgaaaatttcacttttcaatcttgcttgctatcatttctcaccgatttttttggtaattgtgtt-tttgcagACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAG
|| || | | |  |   |   || | |||| || |||  |    |||     ||| ||     || | | ||  |||| |||| |||| |||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
gtagaagatctattgccattgtttatttttgaagcttcttcttcatc-----tcatcg-----ttggatcatgttgttgtttgtagACTTTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTCAAGTTCATTCGATGCTCCAACTGCGGCAAATGCTGCCCTAAG

upper sequence: Vv06s0004g07940.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA17G18200.1 (Glycine max), 3'ss of exon 1
--gtgaggttt-tcctcgaaaatttcacttttcaatcttgcttgctatcatttctcaccgatttttttggtaattgtgtttttgcagACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAG
    ||| | | |  |    | | || | || |    || |      |  ||  ||       | ||   |  |||| | ||||||||| |||||||| |||||||| ||||||||||| |||||||| ||||||||||| ||||| || |||||||||||||||||||||||||| |||
gttcgagatctgttgttcttattctcgccttccgtaattccagaactttcttcttctttttcatcttctattgttgtttgtttgcagACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTCAAATTCATCCGATGCTCCAACTGTGGCAAATGCTGCCCCAAG

upper sequence: Vv06s0004g07940.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA06G14950.1 (Glycine max), 3'ss of exon 1
--------------gtgaggttttcctcgaaaatttcactttt---caatcttgcttgctatcatt-tctcaccgatttttttggtaattgtgtttttgcagACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAG
              |  |   || | |||    |||   ||||   ||| |||  |     ||||  |||||   || || ||| |  || ||| |  |||||| || ||||| |||||||| ||||||||||| |||||||| |||||||||||||||||||| ||||||||||| ||||||||||| ||||||
gtagaagatctatcgccattgttccttcgttttttttcttttttcacaaacttcttcttcttcatcatctcat--atcttcttgttgtttttgtct--gcagACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTCAAGTTCATTCGATGCTCCAACTGCGGCAAATGCTGTCCTAAG

upper sequence: Vv06s0004g07940.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA02G40660.1 (Glycine max), 3'ss of exon 1
---------gtgaggttttcctcgaaaatt-tcacttttcaatcttgcttgctatcatttctcaccgatttttttggtaat---tgtgtttttgcagACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAG
          ||   || | ||||     | | | || | || | | |||  | |  ||||||| |   |  ||   |  |   |   | || |||||| |||||||| |||||||| ||||||||||| |||||||||||||||||||| ||||| || ||||||||||||||||||||||| || |||
gttcgagatctgttcttattctcgctttctgtaaattctaaaaccttcttattctt-tttctcatctcatcgttgaatcttccatcattgttcgcagACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTCAAATTCATCCGGTGCTCCAACTGTGGCAAATGCTGTCCCAAG

upper sequence: Vv06s0004g07940.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA14G38950.1 (Glycine max), 3'ss of exon 1
-------gtgaggttttcctcgaaaatttcacttttcaatcttgcttgctatcatttctcaccgattttt----ttggtaattgtgtt----tttgcagACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAG
        |  | | ||  ||     ||||   |||| ||     |    ||||| |    |   || |     |||    || || |    ||||||||| |||||||| |||||||| ||||||||||| |||||||||||||| ||||| ||||| || ||||||||||| || ||||||||||| |||
gttcgagatctgttcttattctcgcttttcttctttccataaacttcatcatcatcttcttcttcttctcaacgttgaatcttctgctgttgtttgcagACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCATGTCAAATTCATCCGATGCTCCAACTGCGGAAAATGCTGCCCCAAG

upper sequence: Vv06s0004g07940.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA05G21370.1 (Glycine max), 3'ss of exon 1
gtgaggttttcctcgaaaatttcacttttcaatcttgcttgctatcatttctcaccgatt---tttttggtaattgtgtttttgcagACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAG
||  |   |   |    | | ||  ||| |    || | |    |  ||  ||     ||   | |    |  |||| | |||| |||| |||||||| ||||| || ||||||||||| |||||||| ||||| ||||| ||||| || ||||||||||| |||||||||||||| |||
gttcgagatctgttcttattctcggtttccgtaattccataaccttcttcttctttccttgaatctcgtattgttgtttgtttgtagACATTCAAGCGCAGGAACGGAGGTCGCAACAAACACGGCCGTGGCCATGTCAAATTCATCCGATGCTCCAACTGCGGCAAATGCTGCCCCAAG

upper sequence: Vv06s0004g07940.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT2G40590.1 (Arabidopsis thaliana), 3'ss of exon 1
gtgaggttttcctcgaaaatttcacttttcaatcttgcttgctatcatttctcaccgattttt--ttggtaattgtgtttttgcagACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAG
||    |  | |         | |  ||| |||     |    ||      |    ||| ||   ||| |  |||||||   |||||| |||||||||||||| |||||  | |||||||||  | | || ||||||||    ||  | ||||||||||| ||||||||||||||||||
gtactctcattcatcggttgcttatctttgaattacaataaagatagagaattgatgatcttccattgttgtttgtgtt---gcagACTTTCAAGCGAAGGAACGGTGGGAGGAACAAGCACAACAGAGGACACGTCAACCCAATCAGATGCTCCAACTGCGGCAAATGCTGCCCTAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110402791|gb|EC963464.1|EC963464
EST:     GCCGAGCCGACGAGCGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATG                         ACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
genomic: GCCGAGCCGACGAGCGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATGgtgaggtttt ... gtttttgcagACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
EST: gi|110396111|gb|EC961787.1|EC961787
EST:     GCCGAGCCGACGAGAGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATG                         ACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
genomic: GCCGAGCCGACGAGCGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATGgtgaggtttt ... gtttttgcagACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
EST: gi|30127855|gb|CB913194.1|CB913194
EST:     GCCGACGAGAGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATG                         ACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
genomic: GCCGACGAGCGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATGgtgaggtttt ... gtttttgcagACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
EST: gi|77583984|gb|DV221033.1|DV221033
EST:     TAGCCGAGCCGACGAGAGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATG                         ACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
genomic: TAGCCGAGCCGACGAGCGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATGgtgaggtttt ... gtttttgcagACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
EST: gi|161708810|gb|FC060895.1|FC060895
EST:     GCAAGCCTCAGATCTAGGGTTTAGAGGAGGATG                         ACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
genomic: GCAAGCCTCAGATCTAGGGTTTAGAGGAGGATGgtgaggtttt ... gtttttgcagACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
EST: gi|110368524|gb|EC932505.1|EC932505
EST:     TAGCCGAGCCGACGAGCGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATG                         ACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
genomic: TAGCCGAGCCGACGAGCGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATGgtgaggtttt ... gtttttgcagACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
EST: gi|27580824|gb|CB003519.1|CB003519
EST:     GCCGACGAGAGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATG                         ACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
genomic: GCCGACGAGCGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATGgtgaggtttt ... gtttttgcagACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
EST: gi|87586799|gb|DY474928.1|DY474928
EST:     CTCAGATCTAGGGTTTAGAGGAGGATG                         ACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
genomic: CTCAGATCTAGGGTTTAGAGGAGGATGgtgaggtttt ... gtttttgcagACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
EST: gi|110725555|gb|EE102188.1|EE102188
EST:     TAGCCGAGCCGACGAGAGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATG                         ACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
genomic: TAGCCGAGCCGACGAGCGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATGgtgaggtttt ... gtttttgcagACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
EST: gi|110703804|gb|EE080969.1|EE080969
EST:     TAGCCGAGCCGACGAGAGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATG                         ACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
genomic: TAGCCGAGCCGACGAGCGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATGgtgaggtttt ... gtttttgcagACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
EST: gi|46917920|gb|CN547249.1|CN547249
EST:     TAGCCGAGCCGACGAGAGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATG                         ACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
genomic: TAGCCGAGCCGACGAGCGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATGgtgaggtttt ... gtttttgcagACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
EST: gi|110716711|gb|EE091932.1|EE091932
EST:     ACGAGAGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATG                         ACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
genomic: ACGAGCGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATGgtgaggtttt ... gtttttgcagACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
EST: gi|110725961|gb|EE102968.1|EE102968
EST:     TAGCCGAGCCGACGAGAGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATG                         ACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
genomic: TAGCCGAGCCGACGAGCGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATGgtgaggtttt ... gtttttgcagACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
EST: gi|349827973|gb|FQ422841.1|FQ422841
EST:     TAGCCGAGCCGACGAGCGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATG                         ACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
genomic: TAGCCGAGCCGACGAGCGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATGgtgaggtttt ... gtttttgcagACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
EST: gi|30296841|gb|CB973635.1|CB973635
EST:     TAGCCGAGCCGACGAGCGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATG                         ACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
genomic: TAGCCGAGCCGACGAGCGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATGgtgaggtttt ... gtttttgcagACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
EST: gi|110729992|gb|EE106564.1|EE106564
EST:     CAAGCCTCAGATCTAGGGTTTAGAGGAGGATG                         ACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
genomic: CAAGCCTCAGATCTAGGGTTTAGAGGAGGATGgtgaggtttt ... gtttttgcagACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
EST: gi|110387639|gb|EC952322.1|EC952322
EST:     GCCGACGAGAGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATG                         ACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
genomic: GCCGACGAGCGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATGgtgaggtttt ... gtttttgcagACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
EST: gi|34320245|gb|CF372999.1|CF372999
EST:     AGCCGACGAGCGCAAGCCTCA-ATCTAGGGTTTAGAGGAGGATG                         ACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGNCCGCGCCCACGTC
genomic: AGCCGACGAGCGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATGgtgaggtttt ... gtttttgcagACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
EST: gi|110382458|gb|EC946749.1|EC946749
EST:     TAGCCGAGCCGACGAGCGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATG                         ACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
genomic: TAGCCGAGCCGACGAGCGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATGgtgaggtttt ... gtttttgcagACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
EST: gi|110379594|gb|EC944803.1|EC944803
EST:     CGAGCCGACGAGCGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATG                         ACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
genomic: CGAGCCGACGAGCGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATGgtgaggtttt ... gtttttgcagACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
EST: gi|71867612|gb|DT016667.1|DT016667
EST:     TAGCCGAGCCGACGAGAGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATG                         ACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
genomic: TAGCCGAGCCGACGAGCGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATGgtgaggtttt ... gtttttgcagACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
EST: gi|110412062|gb|EC977796.1|EC977796
EST:     CGACGAGAGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATG                         ACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
genomic: CGACGAGCGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATGgtgaggtttt ... gtttttgcagACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
EST: gi|37185071|gb|CF604424.1|CF604424
EST:     TAGCCGAGCCGACGAGCGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATG                         ACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
genomic: TAGCCGAGCCGACGAGCGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATGgtgaggtttt ... gtttttgcagACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
EST: gi|110397683|gb|EC963502.1|EC963502
EST:     GAGCCGACGAGAGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATG                         ACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
genomic: GAGCCGACGAGCGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATGgtgaggtttt ... gtttttgcagACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
EST: gi|110688461|gb|EE067037.1|EE067037
EST:     TAGCCGAGCCGACGAGAGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATG                         ACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
genomic: TAGCCGAGCCGACGAGCGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATGgtgaggtttt ... gtttttgcagACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
EST: gi|110366612|gb|EC930524.1|EC930524
EST:     GCCGAGCCGACGAGAGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATG                         ACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
genomic: GCCGAGCCGACGAGCGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATGgtgaggtttt ... gtttttgcagACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
EST: gi|110386545|gb|EC951146.1|EC951146
EST:     TAGCCGAGCCGACGAGAGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATG                         ACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
genomic: TAGCCGAGCCGACGAGCGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATGgtgaggtttt ... gtttttgcagACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
EST: gi|110381094|gb|EC946410.1|EC946410
EST:     CGAGCGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATG                         ACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
genomic: CGAGCGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATGgtgaggtttt ... gtttttgcagACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
EST: gi|110701330|gb|EE078774.1|EE078774
EST:     GCAAGCCTCAGATCTAGGGTTTAGAGGAGGATG                         ACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
genomic: GCAAGCCTCAGATCTAGGGTTTAGAGGAGGATGgtgaggtttt ... gtttttgcagACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
EST: gi|77587578|gb|DV222954.1|DV222954
EST:     GAGCGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATG                         ACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
genomic: GAGCGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATGgtgaggtttt ... gtttttgcagACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
EST: gi|110701297|gb|EE078703.1|EE078703
EST:     CTCAGATCTAGGGTTTAGAGGAGGATG                         ACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
genomic: CTCAGATCTAGGGTTTAGAGGAGGATGgtgaggtttt ... gtttttgcagACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
EST: gi|87586382|gb|DY474670.1|DY474670
EST:     GCCGAGCCGACGAGCGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATG                         ACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
genomic: GCCGAGCCGACGAGCGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATGgtgaggtttt ... gtttttgcagACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
EST: gi|27580159|gb|CB002854.1|CB002854
EST:     GCCGACGAGAGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATG                         ACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
genomic: GCCGACGAGCGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATGgtgaggtttt ... gtttttgcagACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
EST: gi|37188237|gb|CF607586.1|CF607586
EST:     AGCCTCAGATCTAGGGTTTAGAGGAGGATG                         ACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
genomic: AGCCTCAGATCTAGGGTTTAGAGGAGGATGgtgaggtttt ... gtttttgcagACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
EST: gi|110396512|gb|EC962202.1|EC962202
EST:     GCAAGCCTCAGATCTAGGGTTTAGAGGAGGATG                         ACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
genomic: GCAAGCCTCAGATCTAGGGTTTAGAGGAGGATGgtgaggtttt ... gtttttgcagACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
EST: gi|110689564|gb|EE065900.1|EE065900
EST:     TAGCCGAGCCGACGAGAGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATG                         ACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
genomic: TAGCCGAGCCGACGAGCGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATGgtgaggtttt ... gtttttgcagACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
EST: gi|110369266|gb|EC933420.1|EC933420
EST:     GCCGAGCCGACGAGAGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATG                         ACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
genomic: GCCGAGCCGACGAGCGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATGgtgaggtttt ... gtttttgcagACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
EST: gi|110385038|gb|EC949521.1|EC949521
EST:     GAGCCGACGAGCGCAAGCCTCAGATTTAGGGTTTAGAGGAGGATG                         ACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
genomic: GAGCCGACGAGCGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATGgtgaggtttt ... gtttttgcagACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
EST: gi|77586811|gb|DV222547.1|DV222547
EST:     TAGCCGAGCCGACGAGAGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATG                         ACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
genomic: TAGCCGAGCCGACGAGCGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATGgtgaggtttt ... gtttttgcagACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
EST: gi|110367394|gb|EC931326.1|EC931326
EST:     CGACGAGCGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATG                         ACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
genomic: CGACGAGCGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATGgtgaggtttt ... gtttttgcagACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
EST: gi|30296917|gb|CB973711.1|CB973711
EST:     TAGCCGAGCCGACGAGCGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATG                         ACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
genomic: TAGCCGAGCCGACGAGCGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATGgtgaggtttt ... gtttttgcagACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
EST: gi|110730170|gb|EE106942.1|EE106942
EST:     TAGCCGAGCCGACGAGAGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATG                         ACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC
genomic: TAGCCGAGCCGACGAGCGCAAGCCTCAGATCTAGGGTTTAGAGGAGGATGgtgaggtttt ... gtttttgcagACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caatcttgcttgctatcatttctcaccgatttttttggtaattgtgtttttgcagACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAG
                   ttctcac  putative branch site (score: 2)
                                            tgttttt  putative PPT
                            atttttttggtaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgaggttttcctcgaaaatttcacttttcaatcttgcttgctatcatttctcaccgatttttttggtaattgtgtttttgcagACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC