Sequence
atgc intronic sequence ATGC exonic sequence...cccagggagttaagccattcagagccactcaccaaccaaatgagggaatctcaaattcaagcttgtagctcatttaattaacccacttttcataagatagGATCATCCATAAGAATAAGAATCTTAACACAGGCCATGTCATACGAGTAAGTTTTTGGTTGCATACCAACTCTGTAATTTCTACTCCCTCCGTTCCTTTG
Basic information
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gaatctcaaattcaagcttgtagctcatttaattaacccacttttcataagatagGATCATCCATAAGAATAAGAATCTTAACACAGGCCATGTCATACGAGTAAGTTTTTGGTTGCATACCAACTCTGTAATTTCTACTCCCTCCGTTCCTTTG
aattaac putative branch site (score: 2)
cccacttttc CT-rich tract
tcatttaattaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cccagggagttaagccattcagagccactcaccaaccaaatgagggaatctcaaattcaagcttgtagctcatttaattaacccacttttcataagatagGATCATCCATAAGAATAAGAATCTTAACACAGGCCATGTCATACGAGTAAGTTTTTGGTTGCATACCAACTCTGTAATTTCTACTCCCTCCGTTCCTTTG
- - - - - - - ccattca
- - - - - - - - - - - - ccactca
- - - - - - - - - - - - - - - -ccaacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tcaagct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtagct