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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcttcatatttcttctatataaatggactagctctttgacattttctcattggaattctggataataagtcctagaaatttattgacactggtacatcacagTGTGTTTGCCTGGTTGATGCATTGGGCAATCATACTATGCGGCCCTGTCTCTCAAGTGTTGTTAAGATTCAG

Basic information

species Vitis vinifera
transcript Vv06s0004g07610.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g07610.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA17G37040.1 (Glycine max), 3'ss of exon 2
gtgagcttcatatttcttctatataaatggactagctctttgacattttctcattggaattctggataataagtcctagaaatttattgacactg--gtacatcacagTGTGTTTGCCTGGTTGATGCATTGGGCAATCATACTATGCGGCCCTGTCTCTCAAGTGTTGTTAAGATTCAG-
   || |  |       | | ||    | | |      |||   ||||  | | |  |  | | |   | ||||    ||||| ||   ||      ||   ||||||||||||||  |||||||||  ||||| || | ||| ||||||||||||||||||| || ||| ||  ||||| 
---agttataaggaaggtatttaagttttgtcccaagtttt---atttcattaataaatgttttgtgcaaaagtt---gaaatgtaacaacttgactgtttgtcacagtGTGTTTGTTTGGTTGATGACTTGGGAAACCGTACCATGCGGCCCTGTCTCTCAAATGCTGTGAAAGTTCAGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattggaattctggataataagtcctagaaatttattgacactggtacatcacagTGTGTTTGCCTGGTTGATGCATTGGGCAATCATACTATGCGGCCCTGTCTCTCAAGTGTTGTTAAGATTCAG
                                 tattgac  putative branch site (score: 2)
                         tagaaatttattga  TA-rich tract