Sequence
atgc intronic sequence ATGC exonic sequencegtatccatcttctcttcgtccaatccatcttcagttcctccactggtttgatagcttaaatggaacctcagtgtaaactagattttcttttttctttttcttgttgtttgttacatatacagGAGCTTCCCGTTCACCAGAGGATAGATGCAGTGAGCAGTTTAGTTTATGAAGCAAATGCAAGAGTGCGAGACCCGGTTTATGGATGTGTTGGGGCGATTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g07200.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA18G06530.1 (Glycine max), 3'ss of exon 1
gtatccatcttctcttcgtccaatccatcttcagttcctccactggtttgatagcttaaatggaacctcagtgtaaactagattttcttttttctttttcttgttgtttgttacatatacagGAGCTTCCCGTTCACCAGAGGATAGATGCAGTGAGCAGTTTAGTTTATGAAGCAAATGCAAGAGTGCGAGACCCGGTTTATGGATGTGTTGGGGCGATTT-
| || || | |||| | | | | || || || || | || ||||| ||| || || || || |||| ||| | ||||||||||| |||| || || |||||| |||||||||||||||||||| ||||||||||||||| ||||||| || ||||||| |||||| || || |
------gttttacctacactaaatc--------atgattgtaggtatatgttatttttcttgtagtgaca-tgtaa--taggattcattaaacaagttactc-ttgt-----gcatgtgcaggAGCTTCCAATTCATCAAAGAGCAGATGCTGTGAGCAGTTTAGTTTATGAGGCAAATGCAAGAGTGAGAGACCCAGTGTATGGATCTGTTGGAGCCATATC
upper sequence: Vv06s0004g07200.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA11G29450.1 (Glycine max), 3'ss of exon 1
gtatccatcttctcttcgtccaatccatcttcagttcctccactggtttgatagcttaaatggaacctcagtgtaaactagattttcttttttctttttcttgttgtttgttacatatacagGAGCTTCCCGTTCACCAGAGGATAGATGCAGTGAGCAGTTTAGTTTATGAAGCAAATGCAAGAGTGCGAGACCCGGTTTATGGATGTGTTGGGGCGATTT
||||| | ||| | | || | || ||| ||| || || ||||||| || | | || |||| || | | ||| | ||||||||||| |||| || || |||||| ||||| |||||||||||||| |||||||||||||| ||||||| || |||||||||||||| || || |
--------------aatgtccataagtgtataagtcctacttcttgcatg-tagtggttatgtaat---aggataaactaaatgtg----tcaattaatcttatttatatatgcatgtgcagGAGCTTCCAATTCATCAAAGAGCAGATGCTGTGAGTAGTTTAGTTTATGAGGCAAATGCAAGAGTTAGAGACCCTGTGTATGGATGTGTTGGAGCCATAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcagtgtaaactagattttcttttttctttttcttgttgtttgttacatatacagGAGCTTCCCGTTCACCAGAGGATAGATGCAGTGAGCAGTTTAGTTTATGAAGCAAATGCAAGAGTGCGAGACCCGGTTTATGGATGTGTTGGGGCGATTT
ttttcttttttctttt CT-rich tract
tagattttcttttttc TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatccatcttctcttcgtccaatccatcttcagttcctccactggtttgatagcttaaatggaacctcagtgtaaactagattttcttttttctttttcttgttgtttgttacatatacagGAGCTTCCCGTTCACCAGAGGATAGATGCAGTGAGCAGTTTAGTTTATGAAGCAAATGCAAGAGTGCGAGACCCGGTTTATGGATGTGTTGGGGCGATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA