Sequence
atgc intronic sequence ATGC exonic sequence...gaatgacttacaagaatatttgaatgtgaccttcatattagtttccccatttttcttgttctgttggttgctgaacctctacatttttggctcattacagGCACGAGGGTTAAAGAAACATTTGAAGAGGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTTGGGGGTGCATTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g07150.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA01G31270.1 (Glycine max), 3'ss of exon 1
gaatgacttacaagaatatttgaatgtgaccttcatattagtttccccatttttctt--gttctg---ttggttgctgaacctctacatttttggctcattacagGCACGAGGGTTAAAGAAACATTTGAAGAGGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTTGGGGGTGCATTT
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----ggcctacaatgattcattgct-tggtgtaattgttaggaatattgagtatcttaagttctgacctcaaattctaatttgtagtttttctcctgtatttcagGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGGATGCTTGACAAGCTTGGTGGTGCCTTT
upper sequence: Vv06s0004g07150.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA03G06440.1 (Glycine max), 3'ss of exon 1
gaatgacttacaagaatatttgaatgtgaccttcatattagtttccccatttttc--ttgttctgttggttgctgaacctctacatttttggctcattacagGCACGAGGGTTAAAGAAACATTTGAAGAGGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTTGGGGGTGCATTT
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-aatgattcgtt-gtgtggtcagtggtgtatttgttaggaatatatggtatcttaagttgtgaccttaaattctaatttgtagcttttctcgtgtatttcagGCGAGAGGGTTGAAGAAACACTTGAAGAGGCTCAATGCTCCAAAACACTGGATGCTTGACAAGCTTGGTGGGGCCTTT
upper sequence: Vv06s0004g07150.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: PP1S461_1V6.1 (Physcomitrella patens), 3'ss of exon 1
--gaatgacttacaagaatatttgaatgtgaccttcatattagtttccccatttttcttgttctgttggttgctgaacctctacatttttggctcattacagGCACGAGGGTTAAAGAAACATTTGAAGAGGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTTGGGGGTGCATTT
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cctgcaagcttaaaatgggggtggtttagggttttgaagttggttgatg-atgaggaagtttgagtcgtgttctgagt-tctgtttctcttgtgcgttttagGCTCGTGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTC
upper sequence: Vv06s0004g07150.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: PP1S2_16V6.1 (Physcomitrella patens), 3'ss of exon 1
gaatgacttacaagaatatttgaatgtgaccttcata-ttagtttccccatttt-tcttgttctgttg-gttgctgaacctctacatttttggctcattacagGCACGAGGGTTAAAGAAACATTTGAAGAGGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTTGGGGGTGCATTT
| |||| | | || | | | || | | |||| | | | | ||| |||| | | | | ||| | ||||| || || || ||||| |||||||||||||| ||||| || | ||| |||||||||||||| | || ||||| |||
-tttcgtttacgtcattgttcg--cttcatttttgtggtcggtttatcgactggattttggcctgtcatggtctcctgtattcatctttccaatctctggcagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTT
upper sequence: Vv06s0004g07150.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: PP1S38_194V6.1 (Physcomitrella patens), 3'ss of exon 1
-gaatgacttacaagaatat-ttgaatgtgaccttcatattagtttccccatttttcttgttctgttggttgctgaacctctacatttttggctcattacagGCACGAGGGTTAAAGAAACATTTGAAGAGGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTTGGGGGTGCATTT
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ttatcggtttacgtaaacttgctttacttgtacgaagagtgcgtttgttcctgagtgacgtgtggcttgttacgaactaattgttttcttgtgtctcta--gGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGGATGCTTGACAAGTTGGGTGGTGCCTTC
upper sequence: Vv06s0004g07150.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: PP1S81_172V6.1 (Physcomitrella patens), 3'ss of exon 1
--gaatgacttacaagaatatttgaatgtgaccttcatattagtttccccatttttcttgttctgttg-gttgctgaacctctacatttt-tggctcattacagGCACGAGGGTTAAAGAAACATTTGAAGAGGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTTGGGGGTGCATTT
| || || || |||||| ||| | | ||| ||||| || || | || |||| | | | | || | | | ||||| || || || ||||| |||||||||||||| ||||| || |||||||||||||| |||||| | || || || |||
gaggttggtttcgtagcatatttt----tgaaatgtgcgctgatttttttcttttttttatttttttacgttgtttttgttttttttgttatttttttcttcagGCTCGTGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTCGACAAATTGGGTGGCGCCTTT
upper sequence: Vv06s0004g07150.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: PP1S282_25V6.1 (Physcomitrella patens), 3'ss of exon 1
gaatgacttacaagaatatttgaatgtgaccttcatattagtttccccatttttcttgttctgttggt-----tgctgaacctctacatttttggctcattacagGCACGAGGGTTAAAGAAACATTTGAAGAGGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTTGGGGGTGCATTT
||| || || || | | | | | | | | | | | | ||||| ||||| |||| ||| | | || | ||| ||||| || || || ||||| |||||||||||||| ||||| || |||||||||||||||||||| || || || || ||
--atg-ctggagtgagaatcagggtctt-cggtattttgggactggctgatcaccctgttcaattggtacgtgtgctaaacatgtgttgcggtg-ttgattccagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cccatttttcttgttctgttggttgctgaacctctacatttttggctcattacagGCACGAGGGTTAAAGAAACATTTGAAGAGGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTTGGGGGTGCATTT
tacattttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gaatgacttacaagaatatttgaatgtgaccttcatattagtttccccatttttcttgttctgttggttgctgaacctctacatttttggctcattacagGCACGAGGGTTAAAGAAACATTTGAAGAGGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTTGGGGGTGCATTT
- - - - -acaagaa
- - - - - - - - - - -gaatgtg
- - - - - - - - - - - - - - accttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctctac