1 5' 3' | 2 5' 3' | 3 5' 3' |
...gtcatttattttattgttcatggtgttttgggtctatggctgtgcaagattttagctttatttttgagctgtcattgttgatttgtgggaatggttgtagGAGGAGGGCTTGGTTTATTGATGGGTTTGTTTCTGGGGGCATTGGACAATCCTATAATGCAAGAAGAAATGACTGCTCGGCAGCAATTCATTTACACTGC
species | Vitis vinifera |
transcript | Vv06s0004g07140.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGACATTTGGAACAACTGTGCTGTTCGCAGCGTTGCCAGTGGAGTAATGG GAGGAGGGCTTGGTTTATTGATGGGTTTGTTTCTGGGGGCATTGGACAATC
genomic: AGACATTTGGAACAACTGTGCTGTTCGCAGCGTTGCCAGTGGAGTAATGGgtgagaatga ... atggttgtagGAGGAGGGCTTGGTTTATTGATGGGTTTGTTTCTGGGGGCATTGGACAATC
aagattttagctttatttttgagctgtcattgttgatttgtgggaatggttgtagGAGGAGGGCTTGGTTTATTGATGGGTTTGTTTCTGGGGGCATTGGACAATCCTATAATGCAAGAAGAAATGACTGCTCGGCAGCAATTCATTTACACTGC
tgttgat putative branch site (score: 4)
tttagctttattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcatttattttattgttcatggtgttttgggtctatggctgtgcaagattttagctttatttttgagctgtcattgttgatttgtgggaatggttgtagGAGGAGGGCTTGGTTTATTGATGGGTTTGTTTCTGGGGGCATTGGACAATCCTATAATGCAAGAAGAAATGACTGCTCGGCAGCAATTCATTTACACTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - ttcatgg
- - - - - - - - - - - - -ttttggg
- - - - - - - - - - - - - - - - - - tggctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgtcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgtggg