Sequence
atgc intronic sequence ATGC exonic sequencegtaagttctggagctcgatttgttcgttattgtttaaattcacttcagttcgtagtagatcttggattgttctggatctgtgttacagatcattgttgagttagttgttttttagtggataattttggtgttgattgttctgtttggttcggtggaattgcagTTGTCTAGTATCGGAATTAGTCCGCAATTCATGACATTTACGCATGTGACCATGGAGTCGGATAAGTATATTTGTGTTAGGGAGACGGCGCCGCAGAACA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g06860.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA11G06720.1 (Glycine max), 3'ss of exon 1
gtaagttctggagctcgatttgttcgttattgtttaaattcacttcagttcgtagtagatcttggattgttctggatctgtgttacagatcattgttgagttagttgttttttagtggataattttggtgttgattgttctgtttggttcggtggaattgcagTTGTCTAGTATCGGAATTAGTCCGCAATTCATGACATTTACGCATGTGACCATGGAGTCGGATAAGTATATTTGTGTTAGGGAGACGGCGCCGCAGAACA
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-----------------------------------------------gtccgtatt---tcgccactctctcgtcgttttccccgcaatgccttgccgcattgcccattctctcgtcg----tttt----ctgact-ctccgatacgctcgtcgtttttgcagTTGGCAAGTGTCGGAATCAACCCGCAATTCATCACTTTCACGCATGTCACCATGGAATCGGACAAGTACATTTGCGTCAGGGAAACCGCGCCGCAGAACA
upper sequence: Vv06s0004g06860.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA02G39360.1 (Glycine max), 3'ss of exon 1
gtaagttctggagctcgatttgttcgttattgtttaaattcacttcagttcgtagtagatcttggattgttctggatctgtgttacagat--cattgttgagttagttgttttttagtggataattttggtgttgattgttctgtttggttcggtggaatt--gcagTTGTCTAGTATCGGAATTAGTCCGCAATTCATGACATTTACGCATGTGACCATGGAGTCGGATAAGTATATTTGTGTTAGGGAGACGGCGCCGCAGAACA
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-------------------------------------------------------------cagcattgtcaccatttcattacagtgaccccattgtgaagtttccacattttttttgtgt--ttctatttttt----ttatgtgagattcggcgttcttttgcagCTGGGAAGCGTTGGAATCAACCAGCAATTCATTACATTTACTCATGTGACAATGGAATCGGATAAGTACATTTGTGTCAGGGAAACTGGACCTCAGAACA
upper sequence: Vv06s0004g06860.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA01G38580.1 (Glycine max), 3'ss of exon 1
gtaagttctggagctcgatttgttcgttattgtttaaattcacttcagttcgtagtagatcttggattgttctggatctgtgttacagatcattgttgagttagttgttttttagtggataattttggtgttgattgttctgtttggttcggtggaattgcagTTGTCTAGTATCGGAATTAGTCCGCAATTCATGACATTTACGCATGTGACCATGGAGTCGGATAAGTATATTTGTGTTAGGGAGACGGCGCCGCAGAACA
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-----------------------------------------------gtccgcatt---tcgccactctctcgtcgttttccccgcaatgccttgccgcattgcccattctctcgtcg----tttt----ctgact-ctccgatacgctcttcgtttttgcagTTGGCAAGTGTCGGAATCAACCCGCAATTCATCACTTTCACGCACGTCACCATGGAATCGGACAAGTACATTTGCGTCAGGGAAACCGCGCCGCAGAACA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttttagtggataattttggtgttgattgttctgtttggttcggtggaattgcagTTGTCTAGTATCGGAATTAGTCCGCAATTCATGACATTTACGCATGTGACCATGGAGTCGGATAAGTATATTTGTGTTAGGGAGACGGCGCCGCAGAACA
tgttgat putative branch site (score: 4)
ataatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagttctggagctcgatttgttcgttattgtttaaattcacttcagttcgtagtagatcttggattgttctggatctgtgttacagatcattgttgagttagttgttttttagtggataattttggtgttgattgttctgtttggttcggtggaattgcagTTGTCTAGTATCGGAATTAGTCCGCAATTCATGACATTTACGCATGTGACCATGGAGTCGGATAAGTATATTTGTGTTAGGGAGACGGCGCCGCAGAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA