1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gagagaggtctgtttctctccggatatggtcttaaatgcctgagtttcgatcttttgagattgcaatgtgacacaataatcttctttcttggtcttgcagACAAAGAGAACTCTTTCAGTGGGGAGAGGGCAGGAAGTAAAGCTACTGATGGGGTTGGTGGAAGGGATGGATTTGATCCCAGTGCGCCACCTCCTTTCCG
species | Vitis vinifera |
transcript | Vv06s0004g06730.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAAAGCACTAGTTCTTGGTGATTCCACATCCATCATCAATGGCTGGGG ACAAAGAGAACTCTTTCAGTGGGGAGAGGGCAGGEST: gi|352768954|gb|FQ468145.1|FQ468145
genomic: AAAAGCACTAGTTCTTGGTGACTCCACATCCATCATCAATGGCTGGGGgtaagttcta ... ggtcttgcagACAAAGAGAACTCTTTCAGTGGGGAGAGGGCAGG
EST: GAAAAAGCACTAGTTCTTGGTGACTCCACATCCATCATCAATGGCTGGGG ACAAAGAGAACTCTTTCAGTGGGGAGAGGGCAGGAAGTAAAGCTACTGATGEST: gi|352777477|gb|FQ474105.1|FQ474105
genomic: GAAAAAGCACTAGTTCTTGGTGACTCCACATCCATCATCAATGGCTGGGGgtaagttcta ... ggtcttgcagACAAAGAGAACTCTTTCAGTGGGGAGAGGGCAGGAAGTAAAGCTACTGATG
EST: GAAAAAGCACTAGTTCTTGGTGACTCCACATCCATCATCAATGGCTGGGG ACAAAGAGAACTCTTTCAGTGGGGAGAGGGCAGGAAGTAAAGCTACTGATGEST: gi|161712917|gb|FC062390.1|FC062390
genomic: GAAAAAGCACTAGTTCTTGGTGACTCCACATCCATCATCAATGGCTGGGGgtaagttcta ... ggtcttgcagACAAAGAGAACTCTTTCAGTGGGGAGAGGGCAGGAAGTAAAGCTACTGATG
EST: GAAAAAGCACTAGTTCTTGGTGACTCCACATCCATCATCAATGGCTGGGG ACAAAGAGAACTCTTTCAGTGGGGAGAGGGCAGGAAGTAAAGCTGCTGATGEST: gi|294966337|gb|GW837588.1|GW837588
genomic: GAAAAAGCACTAGTTCTTGGTGACTCCACATCCATCATCAATGGCTGGGGgtaagttcta ... ggtcttgcagACAAAGAGAACTCTTTCAGTGGGGAGAGGGCAGGAAGTAAAGCTACTGATG
EST: GCACTAGTTCTTGGTGACTCCACATCCATCATCAATGGCTGGGG ACAAAGAGAACTCTTTCAGTGGGGAGAGGGCAGGAAGTAAAGCTACTGATGEST: gi|352773722|gb|FQ472504.1|FQ472504
genomic: GCACTAGTTCTTGGTGACTCCACATCCATCATCAATGGCTGGGGgtaagttcta ... ggtcttgcagACAAAGAGAACTCTTTCAGTGGGGAGAGGGCAGGAAGTAAAGCTACTGATG
EST: GAAAAAGCACTAGTTCTTGGTGACTCCACATCCATCATCAATGGCTGGGG ACAAAGAGAACTCTTTCAGTGGGGAGAGGGCAGGAAGTAAAGCTACTGATGEST: gi|351019690|gb|FQ439507.1|FQ439507
genomic: GAAAAAGCACTAGTTCTTGGTGACTCCACATCCATCATCAATGGCTGGGGgtaagttcta ... ggtcttgcagACAAAGAGAACTCTTTCAGTGGGGAGAGGGCAGGAAGTAAAGCTACTGATG
EST: GAAAAAGCACTAGTTCTTGGTGACTCCACATCCATCATCAATGGCTGGGG ACAAAGAGAACTCTTTCAGTGGGGAGAGGGCAGGAAGTAAAGCTACTGATG
genomic: GAAAAAGCACTAGTTCTTGGTGACTCCACATCCATCATCAATGGCTGGGGgtaagttcta ... ggtcttgcagACAAAGAGAACTCTTTCAGTGGGGAGAGGGCAGGAAGTAAAGCTACTGATG
ttcgatcttttgagattgcaatgtgacacaataatcttctttcttggtcttgcagACAAAGAGAACTCTTTCAGTGGGGAGAGGGCAGGAAGTAAAGCTACTGATGGGGTTGGTGGAAGGGATGGATTTGATCCCAGTGCGCCACCTCCTTTCCG
tcttctttcttggtct CT-rich tract
aataatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagagaggtctgtttctctccggatatggtcttaaatgcctgagtttcgatcttttgagattgcaatgtgacacaataatcttctttcttggtcttgcagACAAAGAGAACTCTTTCAGTGGGGAGAGGGCAGGAAGTAAAGCTACTGATGGGGTTGGTGGAAGGGATGGATTTGATCCCAGTGCGCCACCTCCTTTCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - tctctcc
- - - - - - - - - - - - - - - - -aaatgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcaatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gacacaa