Sequence
atgc intronic sequence ATGC exonic sequence...gaaggaaattgtttatctggggagttttgaacaatcagctctatctggatcatgcatcaaccttgcccactgttgcttatcttgacactcctctttgcagATTGCATTGTTCTATGTTGCTGTGCTTGCAGGTCTTCTCCACCGATTTCCTGTAAGCTTTTCTCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g06120.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA0028S00210.2 (Glycine max), 3'ss of exon 1
-gaaggaaattgtttatctggggagttttgaacaatcagctctatctggatcatgcatcaacc-ttgcccactgttgcttatcttgacactcctctttgcagATTGCATTGTTCTATGTTGCTGTGCTTGCAGGTCTTCTCCACCGATTTCCTGTAAGCTTTTCTCAG
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aattggttataaatttccttggttctctcaag--gtagattccataatgatatgacatgacccattacatatggcatactgacttcattctcatattcacagATAGCCTTGTTTTATGCTGCTGTGCTTGCAGGGCTTCTCCATCGATTCCCTGTAAGCTTTTCTCAG
upper sequence: Vv06s0004g06120.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA18G07280.1 (Glycine max), 3'ss of exon 1
---gaaggaaattgtttatctggggagttttgaacaatcag-ctctatctggatcatgcatcaaccttgcccactgttgcttatcttgacactcctctttgcagATTGCATTGTTCTATGTTGCTGTGCTTGCAGGTCTTCTCCACCGATTTCCTGTAAGCTTTTCTCAG
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gttccaattgattatgaatttccttggttctctcaaggtagattccataatgat-atgaccca---ttacacatggcatactgacttcattctcatattcacagATAGCCTTGTTTTATGCTGCTGTGCTTGCGGGGCTTCTCCATCGATTCCCTGTAAGCTTTTCTCAG
upper sequence: Vv06s0004g06120.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT5G58870.1 (Arabidopsis thaliana), 3'ss of exon 1
gaaggaaattgtttatctggggagttttgaacaatcagctctatctggatcatgcatcaaccttgcccactgttgcttatcttgacactcctctttg---cagATTGCATTGTTCTATGTTGCTGTGCTTGCAGGTCTTCTCCACCGATTTCCTGTAAGCTTTTCTCAG
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----------gtaagaccgtgaattat--aatggcttgttggctttaggaaacacttagattgaaaaggtttcttcttttcttgttttttgtttttgtttcagATAGTTCTGTTCTACATTGCAGTGCTTGCAGGGCTTCTCCACCGATTTCCTGTTAACTTTTCCCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71861346|gb|DT010401.1|DT010401EST: AGTTCGGTTCTCCGGATAAGCGGTCCGGGGGCTTCTTAAACTCCGCACTA ATTGCATTGTTCTATGTTGCTGTGCTTGCAGGTCTTCTCCACCGATTTCCT
genomic: AGTTCGGTTCTCCGGATAAGCGGTCCGGGGGCTTCTTAAACTCCGCACTAgtgagttttc ... ctctttgcagATTGCATTGTTCTATGTTGCTGTGCTTGCAGGTCTTCTCCACCGATTTCCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tggatcatgcatcaaccttgcccactgttgcttatcttgacactcctctttgcagATTGCATTGTTCTATGTTGCTGTGCTTGCAGGTCTTCTCCACCGATTTCCTGTAAGCTTTTCTCAG
tcttgac putative branch site (score: 3)
cactcctcttt CT-rich tract
ttatctt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gaaggaaattgtttatctggggagttttgaacaatcagctctatctggatcatgcatcaaccttgcccactgttgcttatcttgacactcctctttgcagATTGCATTGTTCTATGTTGCTGTGCTTGCAGGTCTTCTCCACCGATTTCCTGTAAGCTTTTCTCAG
-aaggaaa
- - - - - - - - - - - - - - - - - -cagctct
- - - - - - - - - - - - - - - - - - - - - - - - -tcatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgacac