Sequence
atgc intronic sequence ATGC exonic sequence...agctctgagattatggataaattaggttgttttctctttcttattcacaaaatgcagctggattaatgatgcctctgctaatgtgttgatcactttgcagCAATGGAATGATACATATGTTCACTATCACAAGACTGATCCAAAGCAAACATACTACTTATCCATGGAGTATCTTCAAGGGCGTGCCTTGACAAATGCAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g06020.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA08G45210.1 (Glycine max), 3'ss of exon 2
agctctgagatta-tggataaa---ttaggttgttttctctttcttattcacaaaatgcagctggattaatgatgcctctgctaatgtgttgatcact-ttgcagCAATGGAATGATACATATGTTCACTATCACAAGACTGATCCAAAGCAAACATACTACTTATCCATGGAGTATCTTCAAGGGCGTGCCTTGACAAATGCAA
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tccctcatcactactggtttaagtcctaggttggtatacttgaattgtttgtt---tgca-tgggactaatgctgttgttgtacat-tgatgataaccatttcagCAATGGAATGAAACGTACCTTCATTTTCACAAAGTTGATCCCAAGCAAACTTACTACTTATCGATGGAGTTCCTTCAAGGTCGAGCTTTGACCAATGCCA
upper sequence: Vv06s0004g06020.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA18G07480.1 (Glycine max), 3'ss of exon 1
agctctgagattatggataaattaggtt---gttttctctttcttattcacaaaatgcagctggattaatgatgcctctgctaatgtgttgatcact-ttgcagCAATGGAATGATACATATGTTCACTATCACAAGACTGATCCAAAGCAAACATACTACTTATCCATGGAGTATCTTCAAGGGCGTGCCTTGACAAATGCAA
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tgttctca--tcactactggtttaagtccaaggttggtatacttgaattgtttgtttgcgtaggactaatgctgttgttgtacat-tgatgattaccctttcaGCAATGGAATGAAACCTACCTTCATTTTCACAAAGTTGATCCCAAGCAAACTTACTACTTATCGATGGAGTTCCTTCAAGGTCGAGCTTTGACCAATGCC-
upper sequence: Vv06s0004g06020.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT3G46970.1 (Arabidopsis thaliana), 3'ss of exon 2
-----------------------------------------------------------------------agctctgagattatggataaattaggttgt--tttctctttcttattcaca---aaatgcagctggattaatgatgcctctgctaatgtgtt----------gatcactttgcagCAATGGAATGATACATATGTTCACTATCACAAGACTGATCCAAAGCAAACATACTACTTATCCATGGAGTATCTTCAAGGGCGTGCCTTGACAAATGCAA
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gtaaccaagtaatttctggactgtttcataagttccgtttgatgaagatatgctggtatagaaatttatggttttccgtggttatatccatctcaatttgcagttgtaggagctaatctatatgtgtgtgtgaatgtgttctttgtgtttatgtgagagtgatataaaatttgggttgtgttgcagCTGTGGAATGAGACTTATGTTCATTTTAACAAAGTTGATCCAAAACAAACTTATTACTTGTCAATGGAGTATCTCCAAGGTCGTGCTTTGACCAATGCCAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122689432|gb|EC939313.1|EC939313EST: AGCAAGCTTATTATGCAACAGCTGAGAGTGTCCGCGATCGTCTGATACAA CAATGGAATGATACATATGTTCACTATCACAAGACTGATCCAAAGCAAACA
genomic: AGCAAGCTTATTATGCAACAGCTGAGAGTGTCCGCGATCGTCTGATACAAgtaagacatg ... cactttgcagCAATGGAATGATACATATGTTCACTATCACAAGACTGATCCAAAGCAAACA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cacaaaatgcagctggattaatgatgcctctgctaatgtgttgatcactttgcagCAATGGAATGATACATATGTTCACTATCACAAGACTGATCCAAAGCAAACATACTACTTATCCATGGAGTATCTTCAAGGGCGTGCCTTGACAAATGCAA
tcacttt CT-rich tract
attaatgat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agctctgagattatggataaattaggttgttttctctttcttattcacaaaatgcagctggattaatgatgcctctgctaatgtgttgatcactttgcagCAATGGAATGATACATATGTTCACTATCACAAGACTGATCCAAAGCAAACATACTACTTATCCATGGAGTATCTTCAAGGGCGTGCCTTGACAAATGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - ggataaa
- - - - - - - - - - - - - - - - - - - - - - - acaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - -gcagctg