Sequence
atgc intronic sequence ATGC exonic sequence...tcaattatttaatattaaaattatgttcgagggtcatcaatatggcctgttattgacacaatcttaagttagtgatttctacactttttctcccctgcagGATCAATTGGGCGACGTTTTGCACTGGATTCGACAAGCAGTGGCTCTCGTGTGTGGGTTACTATGGGGTTCCATACCATTGGTTGGGGGCATATGGATCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g04920.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA12G06700.1 (Glycine max), 3'ss of exon 1
tcaattatttaatattaaaattatgttcgagggtcatcaatatggcctg-ttat-tgacacaatcttaagttagtgatttctacactttttctcccctgcagGATCAATTGGGCGACGTTTTGCACTGGATTCGACAAGCAGTGGCTCTCGTGTGTGGGTTACTATGGGGTTCCATACCATTGGTTGGGGGCATATGGATCA
|| | | || || | | | || | | || || | || || | | | ||| | || | || | || ||||||||||||||| ||||| ||||| |||||| |||||| | | || | |||||| || || |||||||||||||| |||||||| ||||||||| | |
--ttttgtcatgttttgttgttctatgcagtagttacttaattgatctaatcatatgctaacaccccttgtttctccttgtctgtgtgttacctccaagcagGATCAATTGGGAGACGTATTGCATTGGATTAGACAAGTGCTTGGCCTTGCGTGTGGATTCCTTTGGGGTTCCATACCTTTGGTTGGAGGCATATGGTTTA
upper sequence: Vv06s0004g04920.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA11G14780.1 (Glycine max), 3'ss of exon 1
tcaattatttaatattaaaattatgttcgagggtcatcaatatggcctg-ttattgac--acaatcttaagttagtgatttctacactttttctcccctgcagGATCAATTGGGCGACGTTTTGCACTGGATTCGACAAGCAGTGGCTCTCGTGTGTGGGTTACTATGGGGTTCCATACCATTGGTTGGGGGCATATGGATCA
|||||| | || || | | | || | | || || | || | |||| | | | | |||| | | |||| ||||||||||||||| ||||| ||||| |||||| |||||| | | || | |||||| || || |||||||||||||| |||||||| ||||||||| | |
--tcttattttgttttgttgttctatgcagtagttacttaattgatctaatcatatgctaacaacccatgtctcattttgtctatatgctacctccta-gcagGATCAATTGGGAGACGTATTGCATTGGATTAGACAAGTGCTCGGCCTTGCGTGTGGATTCCTTTGGGGTTCCATACCTTTGGTTGGAGGCATATGGTTTAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110365966|gb|EC929552.1|EC929552EST: CTCCGTTCAAATTCGCGAAATTGTTAGATCCAGAGGCCTCTTGGGACAAG GATCAATTGGGCGACGTTTTGCACTGGATTCGACAAGCAGTGGCTCTCGTG
genomic: CTCCGTTCAAATTCGCGAAATTGTTAGATCCAGAGGCCTCTTGGGACAAGgtgaggactt ... tcccctgcagGATCAATTGGGCGACGTTTTGCACTGGATTCGACAAGCAGTGGCTCTCGTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cctgttattgacacaatcttaagttagtgatttctacactttttctcccctgcagGATCAATTGGGCGACGTTTTGCACTGGATTCGACAAGCAGTGGCTCTCGTGTGTGGGTTACTATGGGGTTCCATACCATTGGTTGGGGGCATATGGATCA
tattgac putative branch site (score: 2)
tttctacactttttct putative PPT
aatcttaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tcaattatttaatattaaaattatgttcgagggtcatcaatatggcctgttattgacacaatcttaagttagtgatttctacactttttctcccctgcagGATCAATTGGGCGACGTTTTGCACTGGATTCGACAAGCAGTGGCTCTCGTGTGTGGGTTACTATGGGGTTCCATACCATTGGTTGGGGGCATATGGATCA
- - - - - - - - aaaatta
- - - - - - - - - - - - - - - - -tcatcaa
- - - - - - - - - - - - - - - - - - - - tatggcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - gacacaa