1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtggttttctctgtttttctggattttttagttgggatcagtgcttgcttaagaagttctcctatttcggttgtgatttgatgttttatctattcacttattttgggtttcgttgctgtggttttgcagATTCTTTCCATGATTTTGGATCGATCTATTAGTCCCGATTTGTTGAATCGCAACAAGCAA
species | Vitis vinifera |
transcript | Vv06s0004g04550.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACGATCGCCACTCTGCTCTTCATATCGCCGCTGCTAATGGTCAGATCGAG ATTCTTTCCATGATTTTGGATCGATCTATTAGTCCCGATTTGTTGAATCGCEST: gi|110686614|gb|EE064454.1|EE064454
genomic: ACGATCGCCACTCTGCTCTTCATATCGCCGCTGCTAATGGTCAGATCGAGgtggttttct ... ggttttgcagATTCTTTCCATGATTTTGGATCGATCTATTAGTCCCGATTTGTTGAATCGC
EST: ACGATCGCCACTCTGCTCTTCATATCGCCGCTGCTAATGGTCAGATCGAG ATTCTTTCCATGATTTTGGATCGATCTATTAGTCCCGATTTGTTGAATCGCEST: gi|22013975|gb|BQ799009.1|BQ799009
genomic: ACGATCGCCACTCTGCTCTTCATATCGCCGCTGCTAATGGTCAGATCGAGgtggttttct ... ggttttgcagATTCTTTCCATGATTTTGGATCGATCTATTAGTCCCGATTTGTTGAATCGC
EST: ACGATCGCCACTCTGCTCTTCATATCGCCGCTGCTAATGGTCAGATCGAG ATTCTTTCCATGATTTTGGATCGATCTATTAGTCCCGATTTGTTGAATCGCEST: gi|161707072|gb|FC055949.1|FC055949
genomic: ACGATCGCCACTCTGCTCTTCATATCGCCGCTGCTAATGGTCAGATCGAGgtggttttct ... ggttttgcagATTCTTTCCATGATTTTGGATCGATCTATTAGTCCCGATTTGTTGAATCGC
EST: ACGATCGCCACTCTGCTCTTCATATCGCCGCTGCTAATGGTCAGATCGAG ATTCTTTCCATGATTTTGGATCGATCTATTAGTCCCGATTTGTTGAATCGCEST: gi|110712240|gb|EE089633.1|EE089633
genomic: ACGATCGCCACTCTGCTCTTCATATCGCCGCTGCTAATGGTCAGATCGAGgtggttttct ... ggttttgcagATTCTTTCCATGATTTTGGATCGATCTATTAGTCCCGATTTGTTGAATCGC
EST: ACGATCGCCACTCTGCTCTTCATATCGCCGCTGCTAATGGTCAGATCGAG ATTCTTTCCATGATTTTGGATCGATCTATTAGTCCCGATTTGTTGAATCGCEST: gi|71856782|gb|DT005837.1|DT005837
genomic: ACGATCGCCACTCTGCTCTTCATATCGCCGCTGCTAATGGTCAGATCGAGgtggttttct ... ggttttgcagATTCTTTCCATGATTTTGGATCGATCTATTAGTCCCGATTTGTTGAATCGC
EST: ACGATCGCCACTCTGCTCTTCATATCGCCGCTGCTAATGGTCAGATCGAG ATTCTTTCCATGATTTTGGATCGATCTATTAGTCCCGATTTGTTGAATCGCEST: gi|71857386|gb|DT006441.1|DT006441
genomic: ACGATCGCCACTCTGCTCTTCATATCGCCGCTGCTAATGGTCAGATCGAGgtggttttct ... ggttttgcagATTCTTTCCATGATTTTGGATCGATCTATTAGTCCCGATTTGTTGAATCGC
EST: ACGATCGCCACTCTGCTCTTCATATCGCCGCTGCTAATGGTCAGATCGAG GEST: gi|71857386|gb|DT006441.1|DT006441
genomic: ACGATCGCCACTCTGCTCTTCATATCGCCGCTGCTAATGGTCAGATCGAGgtggttttct ... ggttttgcag-
EST: ACGATCGCCACTCTGCTCTTCATATCGCCGCTGCTAATGGTCAGATCGAG GEST: gi|71857386|gb|DT006441.1|DT006441
genomic: ACGATCGCCACTCTGCTCTTCATATCGCCGCTGCTAATGGTCAGATCGAGgtggttttct ... ggttttgcag-
EST: ACGATCGCCACTCTGCTCTTCATATCGCCGCTGCTAATGGTCAGATCGAG GEST: gi|71857386|gb|DT006441.1|DT006441
genomic: ACGATCGCCACTCTGCTCTTCATATCGCCGCTGCTAATGGTCAGATCGAGgtggttttct ... ggttttgcag-
EST: ACGATCGCCACTCTGCTCTTCATATCGCCGCTGCTAATGGTCAGATCGAG G
genomic: ACGATCGCCACTCTGCTCTTCATATCGCCGCTGCTAATGGTCAGATCGAGgtggttttct ... ggttttgcag-
gatttgatgttttatctattcacttattttgggtttcgttgctgtggttttgcagATTCTTTCCATGATTTTGGATCGATCTATTAGTCCCGATTTGTTGAATCGCAACAAGCAA
atttgat putative branch site (score: 5)
ttttatctattcactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggttttctctgtttttctggattttttagttgggatcagtgcttgcttaagaagttctcctatttcggttgtgatttgatgttttatctattcacttattttgggtttcgttgctgtggttttgcagATTCTTTCCATGATTTTGGATCGATCTATTAGTCCCGATTTGTTGAATCGCAACAAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA