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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctctccatattcactccactacgtagatatttcatatggtttttcaataaaactgacttttatatatattttgaattttccttgttgattAGGGTTTCTATTTGATTGAAAGGGTGACAGTTTGTTCAGCAATCAATGGCTCCTGCTAAAG

Basic information

species Vitis vinifera
transcript Vv06s0004g04090.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110689147|gb|EE065119.1|EE065119
EST:     CGCCACCAC--                         AGGGTTTCTATTTGATTGAAAGGGTGACAGTTTGTTCAGCAATCAATGGCT
genomic: CGCCACCACAGgtctctccat ... cttgttgattAGGGTTTCTATTTGATTGAAAGGGTGACAGTTTGTTCAGCAATCAATGGCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atggtttttcaataaaactgacttttatatatattttgaattttccttgttgattAGGGTTTCTATTTGATTGAAAGGGTGACAGTTTGTTCAGCAATCAATGGCTCCTGCTAAAG
               aactgac  putative branch site (score: 2)
                                        ttttccttgtt  putative PPT
     ttttcaataaaactga  TA-rich tract