Sequence
atgc intronic sequence ATGC exonic sequencegttagggcatacaaatccatgggattagaagatgtcaggaattttcatacattctcaaaatcatatctgatgattcctcatttgtatatactgtagaaaggatgtttagtgactgaaattggtaccagtttaaactcaactctatatttccaaggatgatgtatcttgttctgcttgtgcagTATGATGTGTATGGAGACCTATTGGGCCTTCTGGCAGCTCATCCTGTAACTCCATTGGTATCAATTCACCATCTTGATGTAGTGGACCCGATATTCCCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g03680.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA13G40540.1 (Glycine max), 3'ss of exon 1
gttagggcatacaaatccatgggattagaagatgtcaggaattttcatacattctcaaaatcatatctgatgattcctcatttgtatatactgtagaaaggatgtttagtga-ctgaaattggtaccagtttaaactcaactctatatttccaaggatgatgtatcttgttctgcttgtgcagTATGATGTGTATGGAGACCTATTGGGCCTTCTGGCAGCTCATCCTGTAACTCCATTGGTATCAATTCACCATCTTGATGTAGTGGACCCGATATTCCCAG
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-----------------------------------------------------------------------------caaaaggtata-gtagtgaaaactgtgactagtactcttgtgttattattattattgggaatgctttgtgt----gatgttaat-tcccttggcttgcttatgcagTATGATGTATATGGAGACCTACTAGGCCTTCTAGGGGCACATCCAGTGTCTCCACTTGTGTCACTTCACCACCTTGATGTAGTGCAACCAATATTCCCAA
upper sequence: Vv06s0004g03680.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA16G29720.1 (Glycine max), 3'ss of exon 1
gttagggcatacaaatccatgggattagaagatgtcaggaattttcatacattctcaaaatcatatctgatgattcctcatttgtatatactgtagaaaggatgtttagtgactgaaattggtaccagtttaaa---ctcaactctatatttccaaggatgatgtatcttgttctgcttgtgcagTATGATGTGTATGGAGACCTATTGGGCCTTCTGGCAGCTCATCCTGTAACTCCATTGGTATCAATTCACCATCTTGATGTAGTGGACCCGATATTCCCAG
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------------------------------------------------------------------------------------aatatcat-tattaggagtgcttggtgatttgattctttatttattgaagaatctgaaatttgcatcatcatgtatatttcttccttaattgcttatgcagTATGATGTGTATGGGGACCTTTTAGGCCTTCTGGGGGCGCATCCTGTGGCTCCACTAGTGACATTGCACCATCTTGATGTGGTGCAACCAATATTCCCAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtttaaactcaactctatatttccaaggatgatgtatcttgttctgcttgtgcagTATGATGTGTATGGAGACCTATTGGGCCTTCTGGCAGCTCATCCTGTAACTCCATTGGTATCAATTCACCATCTTGATGTAGTGGACCCGATATTCCCAG
ttctgctt CT-rich tract
tctatattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttagggcatacaaatccatgggattagaagatgtcaggaattttcatacattctcaaaatcatatctgatgattcctcatttgtatatactgtagaaaggatgtttagtgactgaaattggtaccagtttaaactcaactctatatttccaaggatgatgtatcttgttctgcttgtgcagTATGATGTGTATGGAGACCTATTGGGCCTTCTGGCAGCTCATCCTGTAACTCCATTGGTATCAATTCACCATCTTGATGTAGTGGACCCGATATTCCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA