1 5' 3' | 2 5' 3' | 3 5' 3' |
...gccgtgggagaatcaggttttagaggttttgctgttattgttatctcttattataaatttttaaaattttttgttccactggactgatatttttccacagAGTAAAGAAATGGGAAACACGGGAAGCAGTCGCCGGCGACACCAGCGGAGCCACCGCAACCACCCAGCTCTGCCGCCTCAGCTATCACCCCAACCTGAAA
species | Vitis vinifera |
transcript | Vv06s0004g02970.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATCGCAACTGCTAACCCCACCATCCGCACAATCCATTCCCAAG AGTAAAGAAATGGGAAACACGGGAAGCAGTCGCCGGCGGCACCAACGGAGCEST: gi|71860510|gb|DT009565.1|DT009565
genomic: ATCGCAACTGCTAACCCCACCATCCGCACAATCCATTCCCAAGgtgcgaatct ... ttttccacagAGTAAAGAAATGGGAAACACGGGAAGCAGTCGCCGGCGACACCAGCGGAGC
EST: CAAACAGATCGCAACTGCTAACCCCACCATCCGCACAATCCATTCCCAAG AGTAAAGAAATGGGAAACACGGGAAGCAGTCGCCGGCGGCACCAACGGAGC
genomic: CAAACGGATCGCAACTGCTAACCCCACCATCCGCACAATCCATTCCCAAGgtgcgaatct ... ttttccacagAGTAAAGAAATGGGAAACACGGGAAGCAGTCGCCGGCGACACCAGCGGAGC
tcttattataaatttttaaaattttttgttccactggactgatatttttccacagAGTAAAGAAATGGGAAACACGGGAAGCAGTCGCCGGCGACACCAGCGGAGCCACCGCAACCACCCAGCTCTGCCGCCTCAGCTATCACCCCAACCTGAAA
gactgat putative branch site (score: 3)
tatttttcc CT-rich tract
ttataaatttttaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gccgtgggagaatcaggttttagaggttttgctgttattgttatctcttattataaatttttaaaattttttgttccactggactgatatttttccacagAGTAAAGAAATGGGAAACACGGGAAGCAGTCGCCGGCGACACCAGCGGAGCCACCGCAACCACCCAGCTCTGCCGCCTCAGCTATCACCCCAACCTGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - agaatca
- - - - - - - - - - - - - - -tgctgtt