Sequence
atgc intronic sequence ATGC exonic sequence...ctgatatttggatagtgacaggcagaatactgatgagtacttcctttatgactctaccttctgattctgcttctaatgattggaacctctaattgtgcagCTATCAGCTTCAGAAGTACAGAGATGCTGGCTCATTCGTTCTTCCTGTTGATCCAAATGACAAGGAAACTTGGGGTGACAGTGAACACAGGCTTGCTTAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g02690.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA12G08140.1 (Glycine max), 3'ss of exon 1
ctgatatttggatagtgacaggcagaatactgatgagtacttcctttatgactctaccttctgattctgcttctaatgattggaacctctaattgtgcagCTATCAGCTTCAGAAGTACAGAGATGCTGGCTCATTCGTTCTTCCTGTTGATCCAAATGACAAGGAAACTTGGGGTGACAGTGAACACAGGCTTGCTTAT
|| ||| | ||| | | | || | ||| | || || | || || | || | | | | | ||||||||||||||||| ||||||| | ||||||||||||| |||||||| || ||||| || |||||||||||||||||||| ||||||||||||||||| |||
aagaagccaccccagttagtggctagcatttccttggcaccacttttgtactactgtattattatacttactgaaaattctttactattttttattgcagCTATCAGCTTCAAAAGTACAAAAATGCTGGCTCATTTGTTCTTCCAGTGGATCCTAAGGACAAGGAAACTTGGGGTGATAGTGAACACAGGCTTGCATAT
upper sequence: Vv06s0004g02690.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA11G20460.1 (Glycine max), 3'ss of exon 1
ctgatatttggatagtgacaggcagaatactgatgagtacttcctttatgactctaccttctgattct-gcttctaatgattggaacctctaattgt-gcagCTATCAGCTTCAGAAGTACAGAGATGCTGGCTCATTCGTTCTTCCTGTTGATCCAAATGACAAGGAAACTTGGGGTGACAGTGAACACAGGCTTGCTTAT
| | | | || || | | || | |||||| || || | || || ||| ||| || | | | || | ||||||||||||||||||| |||| | ||||||| ||||| |||||||| || ||||| || ||||||||||| |||||||| ||||| ||||||||||| |||
-agccaccccagtt-cagtggctagcattttccctggcaccacttttatgttactgtattattatacttgctgaaaattctttgtttatttttttattgcagCTATCAGCTTCAGAAATACAAAAATGCTGGTTCATTTGTTCTTCCAGTGGATCCTAAGGACAAGGAAACATGGGGTGATAGTGAGCACAGGCTTGCATAT
upper sequence: Vv06s0004g02690.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT5G60700.1 (Arabidopsis thaliana), 3'ss of exon 1
--ctgatatttggatagtgacaggcagaatactgatgagtacttcctttatgactctaccttctgattctgcttctaatgattggaacctctaattgtgcagCTATCAGCTTCAGAAGTACAGAGATGCTGGCTCATTCGTTCTTCCTGTTGATCCAAATGACAAGGAAACTTGGGGTGACAGTGAACACAGGCTTGCTTAT
| ||| || | || | | | | | | | | ||| || | | | ||| || || | || || | | || ||||| |||||||||||||| |||||| |||| || || || |||||||| |||||||||||||| ||||| |||||||| || |||||||||||| | ||||||
aaaatagattcaaattctctggggaaaagttataa-aaatggattttttttgttatgaagtaataattgtggttttgattttttttgtgtgtgttt-tgcagTTATCAGCTTCAGAAATACAGAAATGCAGGTTCGTTTGTTCTTCCCGTTGATCCAAATGATAAGGAGACTTGGGGAGATAGTGAACACAGGTTAGCTTATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|352782614|gb|FQ476694.1|FQ476694EST: TTCATTGAGACTCCCTTCACCTTCATGACCGGAGAAGATCTGCACCTCAG CTATCAGCTTCAGAAGTACAGAGATGCTGGCTCATTCGTTCTTCCTGTTGA
genomic: TTCATTGAGACTCCCTTCACCTTCATGACCGGAGAAGATCTGCACCTCAGgtatgtgtat ... aattgtgcagCTATCAGCTTCAGAAGTACAGAGATGCTGGCTCATTCGTTCTTCCTGTTGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttatgactctaccttctgattctgcttctaatgattggaacctctaattgtgcagCTATCAGCTTCAGAAGTACAGAGATGCTGGCTCATTCGTTCTTCCTGTTGATCCAAATGACAAGGAAACTTGGGGTGACAGTGAACACAGGCTTGCTTAT
taatgatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctgatatttggatagtgacaggcagaatactgatgagtacttcctttatgactctaccttctgattctgcttctaatgattggaacctctaattgtgcagCTATCAGCTTCAGAAGTACAGAGATGCTGGCTCATTCGTTCTTCCTGTTGATCCAAATGACAAGGAAACTTGGGGTGACAGTGAACACAGGCTTGCTTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - tggatag
- - - - - - - - -acaggca
- - - - - - - - - - - - - - -ctgatga
- - - - - - - - - - - - - - - - - - -tacttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgcttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgattgg