1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...atgaggaaatttgcaggtttccagctagatattctgtatatttatgattaaaattttgtggtctcttcttttcttaataattgaaaggatctatttgcagCCAGTAAAGCCTGACACCACTACCTCTGAGCCTAAGCGTAGTAAGGTTGAAATATTCAAAGAACAAAGTAACTTCATCAGATACCCTCTTAATGAGGAGC
species | Vitis vinifera |
transcript | Vv06s0004g02330.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CACGCTCACGCCCACGCTCGTCTCCTTCAGTCATCAGAGCTGTTTCCACG CCAGTAAAGCCTGACACCACTACCTCTGAGCCTAAGCGTAGTAAGGTTGAAEST: gi|161714692|gb|FC063902.1|FC063902
genomic: CACGCTCACGCCCACGCTCGTCTCCTTCAGTCATCAGAGCTGTTTCCACGgtgaggattt ... ctatttgcagCCAGTAAAGCCTGACACCACTACCTCTGAGCCTAAGCGTAGTAAGGTTGAA
EST: CACGCTCACGCCCACGCTCGTCTCCTTCAATCATCAGAGCTGTTTCCACG CCAGTAAAGCCTGACACCACTACCTCTGAGCCTAAGCGTAGTAAGGTTGAAEST: gi|161721056|gb|FC069652.1|FC069652
genomic: CACGCTCACGCCCACGCTCGTCTCCTTCAGTCATCAGAGCTGTTTCCACGgtgaggattt ... ctatttgcagCCAGTAAAGCCTGACACCACTACCTCTGAGCCTAAGCGTAGTAAGGTTGAA
EST: CACGCTCACGCCCACGCTCGTCTCCTTCAATCATCAGAGCTGTTTCCACG CCAGTAAAGCCTGACACCACTACCTCTGAGCCTAAGCGTAGTAAGGTTGAA
genomic: CACGCTCACGCCCACGCTCGTCTCCTTCAGTCATCAGAGCTGTTTCCACGgtgaggattt ... ctatttgcagCCAGTAAAGCCTGACACCACTACCTCTGAGCCTAAGCGTAGTAAGGTTGAA
gattaaaattttgtggtctcttcttttcttaataattgaaaggatctatttgcagCCAGTAAAGCCTGACACCACTACCTCTGAGCCTAAGCGTAGTAAGGTTGAAATATTCAAAGAACAAAGTAACTTCATCAGATACCCTCTTAATGAGGAGC
tcttaat putative branch site (score: 3)
tctattt putative PPT
ttcttttcttaataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgaggaaatttgcaggtttccagctagatattctgtatatttatgattaaaattttgtggtctcttcttttcttaataattgaaaggatctatttgcagCCAGTAAAGCCTGACACCACTACCTCTGAGCCTAAGCGTAGTAAGGTTGAAATATTCAAAGAACAAAGTAACTTCATCAGATACCCTCTTAATGAGGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- -aggaaat
- - - - - -tgcaggt
- - - - - - - - - - ccagcta
- - - - - - - - - - - - - - - - - - - - - - - attaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaagga