Sequence
atgc intronic sequence ATGC exonic sequence...tccccagttaccaactcaaagtttcatatataattgaatgtatggttttggttttgtatgagactaatttaacttgccttcaaaatacctcatgctgtagATGCATATGTGGGGGCATGGATCTCAGTATAGAAAAGGGCCAGAGTCTCTGAGGGGAACACAGCCAACGGCCATGCTTAAACTCCCATGCTTTTGCTGTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g01870.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA13G41570.1 (Glycine max), 3'ss of exon 1
---tccccagttaccaactcaaagtttcatatataattgaatgtatggttttggttttgtatga-gactaatttaacttgccttcaaaatacctcatgctgtagATGCATATGTGGGGGCATGGATCTCAGTATAGAAAAGGGCCAGAGTCTCTGAGGGGAACACAGCCAACGGCCATGCTTAAACTCCCATGCTTTTGCTGTG
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aagtgaatgatgggtgactttcattattcttttcaactaattaattaactatttttttttctcttgaatgatattgctt-tttccaaaat---ttaacctacagATGCATATGTGGGGGCATGGATCTCAATATAGAAAGGGGCCAGAGTCTCTAAGGGGAACTCAACCAACAGCAATGCTTAGACTCCCTTGCTATTGCTGTG
upper sequence: Vv06s0004g01870.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA15G03830.1 (Glycine max), 3'ss of exon 1
tccccagttaccaactca-----aagtttcat-atataattgaatgtatggttttggttttgtatgagactaatttaacttgccttcaaaatacctcatgctgtagATGCATATGTGGGGGCATGGATCTCAGTATAGAAAAGGGCCAGAGTCTCTGAGGGGAACACAGCCAACGGCCATGCTTAAACTCCCATGCTTTTGCTGTG
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---tgagtgaatgaatgatgagtgactttcattattcttttaaactaattaattaactatttttttctcttgaatgatattgcttccaaaaa---ttaacctacagATGCATATGTGGGGGCATGGATCTCAATATAGAAAGGGGCCAGAGTCTCTAAGGGGAACTCAACCAACAGCAATGCTTAGGCTCCCTTGCTATTGCTGCG
upper sequence: Vv06s0004g01870.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA11G14100.1 (Glycine max), 3'ss of exon 1
-tccccagttaccaactcaaagtttcatatataattgaatgtatggttttggttttgtatgagactaatttaacttgccttcaaaatacctcatgctgtagATGCATATGTGGGGGCATGGATCTCAGTATAGAAAAGGGCCAGAGTCTCTGAGGGGAACACAGCCAACGGCCATGCTTAAACTCCCATGCTTTTGCTGTG
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ttattcatgtatgtg-tgagtgtgtcaatggcttccaaattcttcatctaattattctatgctcttacgtgataataatattggtgcaaaaatctacacagATGCATATGTGGGGGCATGGATCTCAATATAGGAAGGGACCAGAGTCTCTAAGGGGAACACAACCAACAGCAATGCTAAGACTCCCTTGCTATTGCTGTG
upper sequence: Vv06s0004g01870.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA12G06080.1 (Glycine max), 3'ss of exon 1
--------tccccagttaccaactcaaagtttcatatataattgaatgtatggttttggttttgtatgagactaatttaacttgccttcaaaatacctcatgctgtagATGCATATGTGGGGGCATGGATCTCAGTATAGAAAAGGGCCAGAGTCTCTGAGGGGAACACAGCCAACGGCCATGCTTAAACTCCCATGCTTTTGCTGTG
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gtatgtgtgagtgtgtcaatggcttccaaattcttcttcatctaattattctatgctgttacgtgataataataaataacattggtgcaaaaataa--------acagATGCATATGTGGGGGCATGGATCTCAATATAGGAAGGGACCAGAGTCTCTAAGGGGAACACAACCCACGGCTATGCTAAGACTTCCTTGCTATTGCTGTG
upper sequence: Vv06s0004g01870.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: PP1S203_59V6.1 (Physcomitrella patens), 3'ss of exon 2
------tccccagttaccaactcaaagtttcatatataattgaatgtatggttttggttttgtatgagactaatttaacttgccttcaaaatacctcatgctgtagATGCATATGTGGGGGCATGGATCTCAGTATAGAAAAGGGCCAGAGTCTCTGAGGGGAACACAGCCAACGGCCATGCTTAAACTCCCATGCTTTTGCTGTG
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cgaaaatccacaaggataaaattggaggtctgtggaaaa----aagttcggatgaaaatttg-aggtgatcggtactgatgatgatatggatgtgggatac-gcagATGCATATGTGGGGTCATGGATCGCAGTACAGAAAAGGTCCTGAATCGCTACGAGGAACCCAACCCACCGCCATGTTGAGGTTGCCGTGCTACTGCTGCG
upper sequence: Vv06s0004g01870.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: EFJ16937 (Selaginella moellendorffii), 3'ss of exon 1
-tccccagttaccaactcaaagtttcatatataattgaatgtatggttttggttttgtatgagactaatttaacttgccttcaaa-atacctcatgctgtagATGCATATGTGGGGGCATGGATCTCAGTATAGAAAAGGGCCAGAGTCTCTGAGGGGAACACAGCCAACGGCCATGCTTAAACTCCCATGCTTTTGCTGTG
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gtcttccatgatcagagcatgcatttttctgaaaaaaaaatttaaaaaattatatgacttaaaaat--ctcaattttctcttacctgtgtgtgactgaacagATGCATATGTGGGGGCATGGATCCCAGTACCGCCGCGGCCCCGAGTCACTGCGCGGCACGCAGCCCACCGCAATGCTCCGGCTGCCCTGCTACTGCTGCG
upper sequence: Vv06s0004g01870.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: EFJ25578 (Selaginella moellendorffii), 3'ss of exon 1
tccccagttaccaactcaaagtttcatatataattgaatgtatggttttggttttgtatgagactaatttaacttgccttcaaaatacctcatgctgtagATGCATATGTGGGGGCATGGATCTCAGTATAGAAAAGGGCCAGAGTCTCTGAGGGGAACACAGCCAACGGCCATGCTTAAACTCCCATGCTTTTGCTGTG
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--------------------gttcacttcttttcttttcttttgaaactg--caagttcaagacaaacttttatgtcctttg------tttctcttccagATGCATATGTGGGGGCATGGTTCTCAGTATCGGCGGGGACCAGAATCTTTGCGAGGTGCTCAGCCGACAGCCATGCTAAGGCTTCCATGCTACTGCTGCG
upper sequence: Vv06s0004g01870.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: EFJ16056 (Selaginella moellendorffii), 3'ss of exon 1
tccccagttaccaactcaaagtttcatatataattgaatgtatggttttggttttgtatgagact----aatttaacttgccttcaaaatacctcatgctg--tagATGCATATGTGGGGGCATGGATCTCAGTATAGAAAAGGGCCAGAGTCTCTGAGGGGAACACAGCCAACGGCCATGCTTAAACTCCCATGCTTTTGCTGTG
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------atcagagcatgcatttttctgaagaaaaaaaatttaaaattatatacgtatccatgacttaaaaatctcatttttctcttacctgtgtgtgactgaacagATGCATATGTGGGGGCATGGATCCCAGTACCGCCGCGGCCCCGAGTCACTGCGCGGCACGCAGCCCACCGCAATGCTCCGGCTGCCCTGCTACTGCTGCGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71865657|gb|DT014712.1|DT014712EST: TTGCTTGTCCTCTTTGCTTTAAGACCTTCAACAGATACAACAACATGCAG ATGCATATGTGGGGGCATGGATCTCAGTATAGAAAAGGGCCAGAGTCTCTG
genomic: TTGCTTGTCCTCTTTGCTTTAAGACCTTCAACAGATACAACAACATGCAGgtatgtttaa ... catgctgtagATGCATATGTGGGGGCATGGATCTCAGTATAGAAAAGGGCCAGAGTCTCTG
EST:
gi|77577606|gb|DV217544.1|DV217544EST: TTGCTTGTCCTCTTTGCTTTAAGACCTTCAACAGATACAACAACATGCAG ATGCATATGTGGGGGCATGGATCTCAGTATAGAAAAGGGCCAGAGTCTCTG
genomic: TTGCTTGTCCTCTTTGCTTTAAGACCTTCAACAGATACAACAACATGCAGgtatgtttaa ... catgctgtagATGCATATGTGGGGGCATGGATCTCAGTATAGAAAAGGGCCAGAGTCTCTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttggttttgtatgagactaatttaacttgccttcaaaatacctcatgctgtagATGCATATGTGGGGGCATGGATCTCAGTATAGAAAAGGGCCAGAGTCTCTGAGGGGAACACAGCCAACGGCCATGCTTAAACTCCCATGCTTTTGCTGTG
taatttaactt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tccccagttaccaactcaaagtttcatatataattgaatgtatggttttggttttgtatgagactaatttaacttgccttcaaaatacctcatgctgtagATGCATATGTGGGGGCATGGATCTCAGTATAGAAAAGGGCCAGAGTCTCTGAGGGGAACACAGCCAACGGCCATGCTTAAACTCCCATGCTTTTGCTGTG
tccccag
- - - - - -caactca
- - - - - - - - - - - - - - - -aattgaa
- - - - - - - - - - - - - - - - - - - tgtatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatacc