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...catggcctcgaattttcaatcagttgaatgcatttattttctttcaaggattgatgccaaaactagattgaccaatgataattttggttctttggtgtagGTTAGGATGCTTTGTGAGAAGGCTAAGGAGATATTAATGGAAGAAAGCAATGTCCAG
species | Vitis vinifera |
transcript | Vv06s0004g00830.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACGAGCAGATATCGCAGCTGATGCAGTGCAAGCCGTTGTCGGAGCAGGAG GTTAGGATGCTTTGTGAGAAGGCTAAGGAGATATTAATGGAAGAAAGCAATEST: gi|110684715|gb|EE062310.1|EE062310
genomic: ACGAGCAGATATCGCAGCTGATGCAGTGCAAGCCGTTGTCGGAGCAGGAGgtgccatttc ... tttggtgtagGTTAGGATGCTTTGTGAGAAGGCTAAGGAGATATTAATGGAAGAAAGCAAT
EST: ACGAGCAGATATCGCAGCTGATGCAGTGCAAGCCGTTGTCGGAGCAGGAG GTTAGGATGCTTTGTGAGAAGGCTAAGGAGATATTAATGGAAGAAAGCAATEST: gi|161716085|gb|FC065837.1|FC065837
genomic: ACGAGCAGATATCGCAGCTGATGCAGTGCAAGCCGTTGTCGGAGCAGGAGgtgccatttc ... tttggtgtagGTTAGGATGCTTTGTGAGAAGGCTAAGGAGATATTAATGGAAGAAAGCAAT
EST: ACGAGCAGATATCGCAGCTGATGCAGTGCAAGCCGTTGTCGGAGCAGGAG GTTAGGATGCTTTGTGAGAAGGCTAAGGAGATATTAATGGAAGAAAGCAATEST: gi|110377055|gb|EC942116.1|EC942116
genomic: ACGAGCAGATATCGCAGCTGATGCAGTGCAAGCCGTTGTCGGAGCAGGAGgtgccatttc ... tttggtgtagGTTAGGATGCTTTGTGAGAAGGCTAAGGAGATATTAATGGAAGAAAGCAAT
EST: ACGAGCAGATATCGCAGCTGATGCAGTGCAAGCCGTTGTCGGAGCAGGAG GTTAGGATGCTTTGTGAGAAGGCTAAGGAGATATTAATGGAAGAAAGCAATEST: gi|71860995|gb|DT010050.1|DT010050
genomic: ACGAGCAGATATCGCAGCTGATGCAGTGCAAGCCGTTGTCGGAGCAGGAGgtgccatttc ... tttggtgtagGTTAGGATGCTTTGTGAGAAGGCTAAGGAGATATTAATGGAAGAAAGCAAT
EST: ACGAGCAGATATCGCAGCTGATGCAGTGCAAGCCGTTGTCGGAGCAGGAG GTTAGGATGCTTTGTGAGAAGGCTAAGGAGATATTGATGGAAGAAAGCAAT
genomic: ACGAGCAGATATCGCAGCTGATGCAGTGCAAGCCGTTGTCGGAGCAGGAGgtgccatttc ... tttggtgtagGTTAGGATGCTTTGTGAGAAGGCTAAGGAGATATTAATGGAAGAAAGCAAT
aaggattgatgccaaaactagattgaccaatgataattttggttctttggtgtagGTTAGGATGCTTTGTGAGAAGGCTAAGGAGATATTAATGGAAGAAAGCAATGTCCAG
gattgac putative branch site (score: 3)
ttcttt putative PPT
aatgataatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catggcctcgaattttcaatcagttgaatgcatttattttctttcaaggattgatgccaaaactagattgaccaatgataattttggttctttggtgtagGTTAGGATGCTTTGTGAGAAGGCTAAGGAGATATTAATGGAAGAAAGCAATGTCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
catggcc
- - - - - - - -tcaatca
- - - - - - - - - - - - -gaatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ccaaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccaatga