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...cgtttctcagtagttgattttcttctctgtcttctctttcatttcttccctttctgatgttgagattattaaagggaaaatatattgaatttgttgtcagTTTTTAAGGAGTAAATGGCATCGGCTTTCACTACCATGTCTTCTGTTGGCTCCTTGGCTGCTCCTGGTGGTCGTGGGATGGATAAGAAACTTGCAACTTC
species | Vitis vinifera |
transcript | Vv06s0004g00240.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCCCCGGCGCCCCTTATCCATACCCCTCTTAAACCCTAGCTTCTCTTCCG TTTTTAAGGAGTAAATGGCATCGGCTTTCACTACCATGTCTTCTGTTGGCTEST: gi|110725842|gb|EE102769.1|EE102769
genomic: CCCCCGGCGCCCCTTATCCATACCCCTCTTAAACCCTAGCTTCTCTTCCGgtaacgctct ... ttgttgtcagTTTTTAAGGAGTAAATGGCATCGGCTTTCACTACCATGTCTTCTGTTGGCT
EST: CTAGCTTCTCTTCCG TTTTTAAAGAGTAAATGGCATCGGCCTTCACTACTATGTCTTCTGTTGGCTEST: gi|351022807|gb|FQ428716.1|FQ428716
genomic: CTAGCTTCTCTTCCGgtaacgctct ... ttgttgtcagTTTTTAAGGAGTAAATGGCATCGGCTTTCACTACCATGTCTTCTGTTGGCT
EST: CCCCCGGCGCCCCTTATCCATACCCCTCTTAAACCCTAGCTTCTCTTCCG TTTTTAAGGAGTAAATGGCATCGGCCTTCACTACTATGTCTTCTGTTGGCTEST: gi|351024818|gb|FQ430643.1|FQ430643
genomic: CCCCCGGCGCCCCTTATCCATACCCCTCTTAAACCCTAGCTTCTCTTCCGgtaacgctct ... ttgttgtcagTTTTTAAGGAGTAAATGGCATCGGCTTTCACTACCATGTCTTCTGTTGGCT
EST: CCCCCGGCGCCCCTTATCCATACCCCTCTTAAACCCTAGCTTCTCTTCCG TTTTTAAGGAGTAAATGGCATCGGCCTTCACTACTATGTCTTCTGTTGGCTEST: gi|349833403|gb|FQ420149.1|FQ420149
genomic: CCCCCGGCGCCCCTTATCCATACCCCTCTTAAACCCTAGCTTCTCTTCCGgtaacgctct ... ttgttgtcagTTTTTAAGGAGTAAATGGCATCGGCTTTCACTACCATGTCTTCTGTTGGCT
EST: CCCCCGGCGCCCCTTATCCATACCCCTCTTAAACCCTAGCTTCTCTTCCG TTTTTAAGGAGTAAATGGCATCGGCCTTCACTACTATGTCTTCTGTTGGCTEST: gi|29782617|gb|CB348122.2|CB348122
genomic: CCCCCGGCGCCCCTTATCCATACCCCTCTTAAACCCTAGCTTCTCTTCCGgtaacgctct ... ttgttgtcagTTTTTAAGGAGTAAATGGCATCGGCTTTCACTACCATGTCTTCTGTTGGCT
EST: CCCCCGGCGCCCCTTATCCATACCCCTCTTAAACCCTAGCTTCTCTTCCG TTTTTAAGGAGTAAATGGCATCGGCTTTCACTACCATGTCTTCTGTTGGCTEST: gi|30256253|gb|CB972096.1|CB972096
genomic: CCCCCGGCGCCCCTTATCCATACCCCTCTTAAACCCTAGCTTCTCTTCCGgtaacgctct ... ttgttgtcagTTTTTAAGGAGTAAATGGCATCGGCTTTCACTACCATGTCTTCTGTTGGCT
EST: CCCCCGGCGCCCCTTATCCATACCCCTCTTAAACCCTAGCTTCTCTTCCG TTTTTAAGGAGTAAATGGCATCGGCTTTCACTACCATGTCTTCTGTTGGCTEST: gi|110689447|gb|EE065678.1|EE065678
genomic: CCCCCGGCGCCCCTTATCCATACCCCTCTTAAACCCTAGCTTCTCTTCCGgtaacgctct ... ttgttgtcagTTTTTAAGGAGTAAATGGCATCGGCTTTCACTACCATGTCTTCTGTTGGCT
EST: TTAAACCCTAGCTTCTCTTCCG TTTTTAAGGAGTAAATGGCATCGGCTTTCACTACCATGTCTTCTGTTGGCTEST: gi|351040630|gb|FQ438174.1|FQ438174
genomic: TTAAACCCTAGCTTCTCTTCCGgtaacgctct ... ttgttgtcagTTTTTAAGGAGTAAATGGCATCGGCTTTCACTACCATGTCTTCTGTTGGCT
EST: CCCCCGGCGCCCCTTATCCATACCCCTCTTAAACCCTAGCTTCTCTTCCG TTTTTAAGGAGTAAATGGCATCGGCCTTCACTACTATGTCTTCTGTTGGCTEST: gi|351025708|gb|FQ426722.1|FQ426722
genomic: CCCCCGGCGCCCCTTATCCATACCCCTCTTAAACCCTAGCTTCTCTTCCGgtaacgctct ... ttgttgtcagTTTTTAAGGAGTAAATGGCATCGGCTTTCACTACCATGTCTTCTGTTGGCT
EST: CCCCCGGCGCCCCTTATCCATACCCCTCTTAAACCCTAGCTTCTCTTCCG TTTTTAAGGAGTAAATGGCATCGGCCTTCACTACTGTGTCTTCTGTTGGCT
genomic: CCCCCGGCGCCCCTTATCCATACCCCTCTTAAACCCTAGCTTCTCTTCCGgtaacgctct ... ttgttgtcagTTTTTAAGGAGTAAATGGCATCGGCTTTCACTACCATGTCTTCTGTTGGCT
ttccctttctgatgttgagattattaaagggaaaatatattgaatttgttgtcagTTTTTAAGGAGTAAATGGCATCGGCTTTCACTACCATGTCTTCTGTTGGCTCCTTGGCTGCTCCTGGTGGTCGTGGGATGGATAAGAAACTTGCAACTTC
ttctgat putative branch site (score: 3)
attattaaagggaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgtttctcagtagttgattttcttctctgtcttctctttcatttcttccctttctgatgttgagattattaaagggaaaatatattgaatttgttgtcagTTTTTAAGGAGTAAATGGCATCGGCTTTCACTACCATGTCTTCTGTTGGCTCCTTGGCTGCTCCTGGTGGTCGTGGGATGGATAAGAAACTTGCAACTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - -tgtcttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaaaat