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...tttattaatttgtgtatgggaagttaggggtttgtcattgtttgtgtaatgtctgtatttttggttgaaagaattgttgatatgggtgatttggatgtagAGGAACAGCTGGTGTTTGATTTGGCGGAGAGGTGGGAACAAAGATTGGTAGTGATTGAAGAATGGCGGATCAAGTTTTGGAAGGGAGCCAACCGGTGGAT
species | Vitis vinifera |
transcript | Vv06s0004g00180.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCTCTCCCCGCAGATCTTCGAGCCTTCCAAACCCTAATTCCAACCCAAG AGGAACAGCTGGTGTTTGATTTGGCGGAGAGGTGGGAACAAAGATTGGTAGEST: gi|349817400|gb|FQ405404.1|FQ405404
genomic: CTCTCTCCCCGCAGATTTTCGAGCCTTCCAAACCCTAATTCCAACCCAAGgtccgatccc ... ttggatgtagAGGAACAGCTGGTGTTTGATTTGGCGGAGAGGTGGGAACAAAGATTGGTAG
EST: CTCTCTCCCCGCAGATTTTCGAGCCTTCCAAACCCTAATTCCAACCCAAG AGGAACAGCTGGTGTTTGATTTGGCGGAGAGGTGGGAACAAAGATTGGTAGEST: gi|110721938|gb|EE097741.1|EE097741
genomic: CTCTCTCCCCGCAGATTTTCGAGCCTTCCAAACCCTAATTCCAACCCAAGgtccgatccc ... ttggatgtagAGGAACAGCTGGTGTTTGATTTGGCGGAGAGGTGGGAACAAAGATTGGTAG
EST: CTCTCTCCCCGCAGATTTTCGAGCCTTCCAAACCCTAATTCCAACCCAAG AGGAACAGCTGGTGTTTGATTTGGCGGAGAGGTGGGAACAAAGATTGGTAGEST: gi|71881466|gb|DT030521.1|DT030521
genomic: CTCTCTCCCCGCAGATTTTCGAGCCTTCCAAACCCTAATTCCAACCCAAGgtccgatccc ... ttggatgtagAGGAACAGCTGGTGTTTGATTTGGCGGAGAGGTGGGAACAAAGATTGGTAG
EST: CTCTCTCCCCGCAGATCTTCGAGCCTTCCAAACCCTAATTCCAACCCAAG AGGAACAGCTGGTGTTTGATTTGGCGGAGAGGTGGGAACAAAGATTGGTAGEST: gi|110724394|gb|EE100183.1|EE100183
genomic: CTCTCTCCCCGCAGATTTTCGAGCCTTCCAAACCCTAATTCCAACCCAAGgtccgatccc ... ttggatgtagAGGAACAGCTGGTGTTTGATTTGGCGGAGAGGTGGGAACAAAGATTGGTAG
EST: CTCTCTCCCCGCAGATTTTCGAGCCTTCCAAACCCTAATTCCAACCCAAG AGGAACAGCTGGTGTTTGATTTGGCGGAGAGGTGGGAACAAAGATTGGTAGEST: gi|71881168|gb|DT030223.1|DT030223
genomic: CTCTCTCCCCGCAGATTTTCGAGCCTTCCAAACCCTAATTCCAACCCAAGgtccgatccc ... ttggatgtagAGGAACAGCTGGTGTTTGATTTGGCGGAGAGGTGGGAACAAAGATTGGTAG
EST: CTCTCTCCCCGCAGATCTTCGAGCCTTCCAAACCCTAATTCCAACCCAAG AGGAACAGCTGGTGTTTGATTTGGCGGAGAGGTGGGAACAAAGATTGGTAG
genomic: CTCTCTCCCCGCAGATTTTCGAGCCTTCCAAACCCTAATTCCAACCCAAGgtccgatccc ... ttggatgtagAGGAACAGCTGGTGTTTGATTTGGCGGAGAGGTGGGAACAAAGATTGGTAG
gtaatgtctgtatttttggttgaaagaattgttgatatgggtgatttggatgtagAGGAACAGCTGGTGTTTGATTTGGCGGAGAGGTGGGAACAAAGATTGGTAGTGATTGAAGAATGGCGGATCAAGTTTTGGAAGGGAGCCAACCGGTGGAT
tgttgat putative branch site (score: 4)
tgtattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttattaatttgtgtatgggaagttaggggtttgtcattgtttgtgtaatgtctgtatttttggttgaaagaattgttgatatgggtgatttggatgtagAGGAACAGCTGGTGTTTGATTTGGCGGAGAGGTGGGAACAAAGATTGGTAGTGATTGAAGAATGGCGGATCAAGTTTTGGAAGGGAGCCAACCGGTGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - tgtatgg
- - - - - - - - - - - - - -gggtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgggtga