Sequence
atgc intronic sequence ATGC exonic sequence...gcataatacttggctttcaacctaattgagaataaagcaattgaattgaattttttttttttttttttgctttaatcttcttttcatctcactattgcagGGTGATGCTGATATCTTTTTCCCTACAGACTTTTGGCTTTTAGAACGTATGGATCACTTCTGCTCTGGGTGGCTGAAAGCATGTGAATATAAATCATCCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0136g00320.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT1G04900.1 (Arabidopsis thaliana), 3'ss of exon 11
-----------------------------gcataatacttggctttcaacctaattgagaataaagcaattgaattgaattttttttttttttttttgctttaatcttctttt-catctc----actattgcagGGTGATGCTGATATCTTTTTCCCTACAGACTTTTGGCTTTTAGAACGTATGGATCACTTCTGCTCTGGGTGGCTGAAAGCATGTGAATATAAATCATCCA
| || | || | ||| | ||||| |||| || | || ||||| || | | || ||| | ||| | | || | | |||||||||||||||||||| |||||||| || || || |||||| ||||||| ||||| || | || || || ||| ||| || | || |
gtgcgagatatctgcaaatttccttctttgactacttatttggtttattctcaattgcgaatcgagtagttttcttgaacttctaacctcattgaaaacttcacaattcatatgtatgttggatgatcttgcagGGTGATGCTGATATATTTTTCCCAACCGATTTCTGGCTTCTAGAACGAATGGACCATTATTGTTCCGGTTGGAGGAAGATGGAAAAAGACGGGACACCAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgaattttttttttttttttttgctttaatcttcttttcatctcactattgcagGGTGATGCTGATATCTTTTTCCCTACAGACTTTTGGCTTTTAGAACGTATGGATCACTTCTGCTCTGGGTGGCTGAAAGCATGTGAATATAAATCATCCA
atctcac putative branch site (score: 3)
tttttttttttttttt CT-rich tract
tttttttttttttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gcataatacttggctttcaacctaattgagaataaagcaattgaattgaattttttttttttttttttgctttaatcttcttttcatctcactattgcagGGTGATGCTGATATCTTTTTCCCTACAGACTTTTGGCTTTTAGAACGTATGGATCACTTCTGCTCTGGGTGGCTGAAAGCATGTGAATATAAATCATCCA
- - - tacttgg
- - - - - - - -ttcaacc
- - - - - - - - - - - - - - - - -aaagcaa
- - - - - - - - - - - - - - - - - - - aattgaa