Sequence
atgc intronic sequence ATGC exonic sequence...ttctcttgctttgagttcaatgatggttaaccaggaatttggatattctcatactttgagttgaacgagaaattaaggaatcttttaacattgtcctcagGTTGCAAGCTTTGGAGCCTCTCTAATGGATTATAACATCTTGACAATGTCAATTGCACCAATGGATATACATGAAGCTCAAGTACAGTTCGCCTTGGAAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0124g00530.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA08G47710.1 (Glycine max), 3'ss of exon 1
ttctcttgctttgagttcaatgatgg----ttaaccaggaatttggatattctcatactttgagttga-acgagaaattaaggaatcttttaacattgtcctcagGTTGCAAGCTTTGGAGCCTCTCTAATGGATTATAACATCTTGACAATGTCAATTGCACCAATGGATATACATGAAGCTCAAGTACAGTTCGCCTTGGAAA
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---ctctgctcaatgttggataatgaaactttgttcttctttttgggtttatttat--tataacttcatgtaatgaatttgtgttctgaatgtgcataatcgtagGTTGCAAGCTTTGGAGCTTCTCTGATGGACTATGATATCTTGACAATGTCACTTGCACCAAGTGATGAACATCAATCTCAAGTACAGTTTGCCCTAGAAA
upper sequence: Vv05s0124g00530.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA18G53780.1 (Glycine max), 3'ss of exon 1
--ttctcttgctttgagttcaatgatggttaac-caggaatttggatattctcatactttgagttgaacgagaaattaaggaatcttttaacattgtcctcagGTTGCAAGCTTTGGAGCCTCTCTAATGGATTATAACATCTTGACAATGTCAATTGCACCAATGGATATACATGAAGCTCAAGTACAGTTCGCCTTGGAAA
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aagaaattcactttg--cctaatgaaactttgttcatctttttgggtttatttattataactacatgtaatgaatttgtgttctgaatgtgcataatcgt-agGTTGCAAGCTTTGGAGCTTCTCTGATGGACTATGGTATCTTGACAATGTCACTGGCGCCTAGTGATGAACATCAATCTCAAGTACAGTTTGCCCTAGAAA
upper sequence: Vv05s0124g00530.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT2G43200.1 (Arabidopsis thaliana), 3'ss of exon 1
-----ttctcttgctt---tgagttcaatga--tggttaaccaggaatttggata----ttctcatactttgagttgaacgagaaattaaggaatcttttaacattgt--cctcagGTTGCAAGCTTTGGAGCCTCTCTAATGGATTATAACATCTTGACAATGTCAATTGCACCAATGGATATACATGAAGCTCAAGTACAGTTCGCCTTGGAAA
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gtgagttcagttacatgaatagacaccagaacttgattcatcttgatattttacagcagtattactactttcgattatgatggattccatgtgttttgttggacccaaaatgtcagGTAGCGAGTTTTGGAGCCTTTTTGCTGAACTATAAGATTTTGACAATGTCCATTGCACCGAGGGATATACATGAGGCTCAAGTTCAGTTCGCATTAGAAC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttctcatactttgagttgaacgagaaattaaggaatcttttaacattgtcctcagGTTGCAAGCTTTGGAGCCTCTCTAATGGATTATAACATCTTGACAATGTCAATTGCACCAATGGATATACATGAAGCTCAAGTACAGTTCGCCTTGGAAA
ttttaac putative branch site (score: 2)
ttgtcctc CT-rich tract
aatcttttaacatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttctcttgctttgagttcaatgatggttaaccaggaatttggatattctcatactttgagttgaacgagaaattaaggaatcttttaacattgtcctcagGTTGCAAGCTTTGGAGCCTCTCTAATGGATTATAACATCTTGACAATGTCAATTGCACCAATGGATATACATGAAGCTCAAGTACAGTTCGCCTTGGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- ctcttgc
- - - - - - - - - - tgatggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaattaa