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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgtcaacttcatttcattcatgcttttcataaatattccattacattatggcaattatcattaaattttgtttatttatatctcagGTTTTGTTGGTGATGTTCTTGTTTTTCTTGCAAACCCTCATACTTACATGAATTTGAGTGGTGAATCA

Basic information

species Vitis vinifera
transcript Vv05s0124g00260.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0124g00260.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA05G28940.1 (Glycine max), 3'ss of exon 3
gtctgtcaacttcatttcattcatgcttttcataaatattccattacattatggcaattatcattaaattttgtttatttatatctcagGTTTTGTTGGTGATGTTCTTGTTTTTCTTGCAAACCCTCATACTTACATGAATTTGAGTGGTGAATCA
|| ||||  || |  |   ||  | ||||| ||   | ||  | | |||       | | | ||||      ||     | | |  |||||||||||||||| |||| ||||||||||||||| ||||| |||||||||||| | ||||||||||||
gtttgtctgctgctctctgtttct-cttttgatgtttcttgtaattcat------gaattttattaggcaaggtggtggtttgttacagGTTTTGTTGGTGAAGTTCCTGTTTTTCTTGCAAAGCCTCAAACTTACATGAATCTCAGTGGTGAATCA

upper sequence: Vv05s0124g00260.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA08G12110.1 (Glycine max), 3'ss of exon 3
---gtctgtcaacttcattt--cattcatgcttttcataaatattccattacattatggcaattatca---ttaaattttgtttatttatatctcagGTTTTGTTGGTGATGTTCTTGTTTTTCTTGCAAACCCTCATACTTACATGAATTTGAGTGGTGAATCA
    | ||||  | ||||||   |||| || |||   |  || || || | | |  ||  | || | |   |||     |||     | | |  |||||||||||||||| |||| |||||| |||||||| ||||| |||||||||||| | ||||||||||| 
gttttttgtctgcctcatttgatattcctgttttctgtttatctttcaatgcttgttgtaatttgtgaatcttaggcactgtggtcgtttgttacagGTTTTGTTGGTGAAGTTCCTGTTTTCCTTGCAAAGCCTCAAACTTACATGAATCTCAGTGGTGAATCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatattccattacattatggcaattatcattaaattttgtttatttatatctcagGTTTTGTTGGTGATGTTCTTGTTTTTCTTGCAAACCCTCATACTTACATGAATTTGAGTGGTGAATCA
                                       tttattt  CT-rich tract
             attatggcaattatca  TA-rich tract