Sequence
atgc intronic sequence ATGC exonic sequence...tccctaaatataaatttttcctagttttgagatttcaatttaatttcatgtaaatttgctttcatgaactcgaacttatgctaacaattgcggataacagGACATCTTGGTAGGCGGAACAGACACAACAGCCACAATGGTCGAGTGGGTGATGGCGGAGATGATTCGAAATCCGGTGATAATGACAAGGGCACAAGAAG
Basic information
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71871426|gb|DT020481.1|DT020481EST: AAGACACTGAAACACCGATCACCATGACACAAATCAAGGCCTTGTTGATG GACATCTTGGTAGGCGGAACAGACACAACAGCCACAATGGTCGAGTGGGTG
genomic: AAGACACTGAAACACCGATCACCATGACACAAATCAAGGCCTTGTTGATGgtaattttat ... cggataacagGACATCTTGGTAGGCGGAACAGACACAACAGCCACAATGGTCGAGTGGGTG
EST:
gi|71867747|gb|DT016802.1|DT016802EST: AAGACACTGAAACACCGATCACCATGACACAAATCAAGGCCTTGTTGATG GACATCTTGGTAGGCGGAACAGACACAACAGCCACAATGGTCGAGTGGGTG
genomic: AAGACACTGAAACACCGATCACCATGACACAAATCAAGGCCTTGTTGATGgtaattttat ... cggataacagGACATCTTGGTAGGCGGAACAGACACAACAGCCACAATGGTCGAGTGGGTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcatgtaaatttgctttcatgaactcgaacttatgctaacaattgcggataacagGACATCTTGGTAGGCGGAACAGACACAACAGCCACAATGGTCGAGTGGGTGATGGCGGAGATGATTCGAAATCCGGTGATAATGACAAGGGCACAAGAAG
tgctaac putative branch site (score: 1)
taaattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tccctaaatataaatttttcctagttttgagatttcaatttaatttcatgtaaatttgctttcatgaactcgaacttatgctaacaattgcggataacagGACATCTTGGTAGGCGGAACAGACACAACAGCCACAATGGTCGAGTGGGTGATGGCGGAGATGATTCGAAATCCGGTGATAATGACAAGGGCACAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
-ccctaaa
- - - - - - - - - - - - - - - - - - - - - - -tcatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaatt