Sequence
atgc intronic sequence ATGC exonic sequencegtgagtgtgttcttcacttcttacaaaagtttacggaatgttcataccatctagtagaaaatggctagtgcctatgttcatagtttcatcctaaccagtagtgtctaacccttgtgaaaagacggatccgaattgtaagtacctaatccaaatttcttctgtttaatgtagGGAGATTAAGAATACAAAGAAGATTTCTAGCTCTCCTCGCAAGGTGCAAGTAACCCACTCAATGCCACCACACAAGATTGAGATTTTCAAATCCATGGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0094g00580.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA07G32850.1 (Glycine max), 3'ss of exon 1
gtgagtgtgttcttcacttcttacaaaagtttacggaatgttcataccatctagtagaaaatggctagtgcctatgttcatagt-ttcatcctaaccagtagtgtctaacccttgtgaaaagacggatc-cgaattgtaagtacctaatccaaatttcttctgtttaatgtagGGAGATTAAGAATACAAAGAAGATTTCTAGCTCTCCTCGCAAGGTGCA------AGTAACCCACTCAATGCCACCACACAAGATTGAGATTTTCAAATCCATGGAG
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----------------------------------------------------------------ccaataataccattcactctattgatcaaatttaccggcatatgatcatt-tgaaaagttgttttattatttctctaaaagtcatttgaatttctt--------tgtagAGAGGTTGAAAATATTAAGAAGCCATTCACTCCTCCCAGAGAAGTGCATGTTCAAGTAACCCACTCTATGCCTCCCCAGAAGATTGAGATTTTCAAATCT------
upper sequence: Vv05s0094g00580.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA02G15600.1 (Glycine max), 3'ss of exon 1
gtgagtgtgttcttcacttcttacaaaagtttacggaatgttcataccatctagtagaaaatggctagtgcctatgttcatagtttcatcctaaccagtagtgtctaacccttgtgaaaagacggatccgaattgtaagtacctaatccaaatttcttctgtttaatgtagGGAGATTAAGAATACAAAGAAGATTTCTAGCTCTCCTCGCAAGGTGCA------AGTAACCCACTCAATGCCACCACACAAGATTGAGATTTTCAAATCCATGGAG
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-----------------------------------------------------------taccaatgatgcctttcactcta--ttgatcaaatttaccagcatatgatcatttaaaaacattttattatttctctaaaagtc--gtttgaatttctt--------tgtagAGAGGTTGAAAATATTAAGAAGCCATTCACTCCTCCCAGAGAAGTGCATGTTCAAGTAACCCACTCTATGCCTCCTCAGAAGATTGAGATTTTCAAATCT------ atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaaagacggatccgaattgtaagtacctaatccaaatttcttctgtttaatgtagGGAGATTAAGAATACAAAGAAGATTTCTAGCTCTCCTCGCAAGGTGCAAGTAACCCACTCAATGCCACCACACAAGATTGAGATTTTCAAATCCATGGAG
tttcttctgttt CT-rich tract
aaatttctt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagtgtgttcttcacttcttacaaaagtttacggaatgttcataccatctagtagaaaatggctagtgcctatgttcatagtttcatcctaaccagtagtgtctaacccttgtgaaaagacggatccgaattgtaagtacctaatccaaatttcttctgtttaatgtagGGAGATTAAGAATACAAAGAAGATTTCTAGCTCTCCTCGCAAGGTGCAAGTAACCCACTCAATGCCACCACACAAGATTGAGATTTTCAAATCCATGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA