1 5' 3' | 2 5' 3' | 3 5' 3' |
...ggagtttgctagcatggtcataaacatgtatgatgccttcattcatgattctcagtatggttttttagattatgctaactccgtttattttcatctgcagAGTTAGTATCTGATTGTTTGAAGTGTTGCACAGAGGATTCTGATGATTCCATGAGCAAG
species | Vitis vinifera |
transcript | Vv05s0094g00490.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCTCTCTGCTCCGACTGCAATACCTTGGCCGATTATGTCAAAGACCAAG AGTTAGTATCTGATTGTTTGAAGTGTTGCACAGAGGATTCTGATGATTCCAEST: gi|110692825|gb|EE068530.1|EE068530
genomic: CGCTCTCTGCTCCGACTGCAATACCTTGGCCGAGTATGTCAAAGACCAAGgctagtaccc ... tcatctgcagAGTTAGTATCTGATTGTTTGAAGTGTTGCACAGAGGATTCTGATGATTCCA
EST: CGCTCTCTGCTCCGACTGCAATACCTTGGCCGATTATGTCAAAGACCAAG AGTTAGTATCTGATTGTTTGAAGTGTTGCACAGAGGATTCTGATGATTCCAEST: gi|30129296|gb|CB914635.1|CB914635
genomic: CGCTCTCTGCTCCGACTGCAATACCTTGGCCGAGTATGTCAAAGACCAAGgctagtaccc ... tcatctgcagAGTTAGTATCTGATTGTTTGAAGTGTTGCACAGAGGATTCTGATGATTCCA
EST: CGCTCTCTGCTCCGACTGCAATACCTTGGCCGATTATGTCAAAGACCAAG AGTTAGTATCTGATTGTTTGAAGTGTTGCACAGAGGATTCTGATGATTCCAEST: gi|26265467|gb|CA816530.1|CA816530
genomic: CGCTCTCTGCTCCGACTGCAATACCTTGGCCGAGTATGTCAAAGACCAAGgctagtaccc ... tcatctgcagAGTTAGTATCTGATTGTTTGAAGTGTTGCACAGAGGATTCTGATGATTCCA
EST: CGCTCTCTGCTCCGACTGCAATACCTTGGCCGATTATGTCAAAGACCAAG AGTTAGTATCTGATTGTTTGAAGTGTTGCACAGAGGACTCTGATGATTCCA
genomic: CGCTCTCTGCTCCGACTGCAATACCTTGGCCGAGTATGTCAAAGACCAAGgctagtaccc ... tcatctgcagAGTTAGTATCTGATTGTTTGAAGTGTTGCACAGAGGATTCTGATGATTCCA
tgattctcagtatggttttttagattatgctaactccgtttattttcatctgcagAGTTAGTATCTGATTGTTTGAAGTGTTGCACAGAGGATTCTGATGATTCCATGAGCAAG
tgctaac putative branch site (score: 1)
ctccgtttattttc CT-rich tract
ttttttagattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggagtttgctagcatggtcataaacatgtatgatgccttcattcatgattctcagtatggttttttagattatgctaactccgtttattttcatctgcagAGTTAGTATCTGATTGTTTGAAGTGTTGCACAGAGGATTCTGATGATTCCATGAGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - -gctagca
- - - - - - - - - cataaac
- - - - - - - - - - - - - - - - - gccttca
- - - - - - - - - - - - - - - - - - - - - -catgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - cagtatg