Sequence
atgc intronic sequence ATGC exonic sequencegtaagatcgcgatcccgttaattgaaaaaaccttatatttcaattatttgaaattaattttaatttttatcacataatgttattacatatgctttgtctaatgaagatattttttgtgtatagACTTTTGTTACATAGAAGAAATAGATGGTGCCTCTAAGGACTATTGCGATGAGAGCAACACACAGTACCCATGTGTAGCTGGAAAGGGTTACTATGGTCG
Basic information
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161717983|gb|FC069272.1|FC069272EST: CAAGCGGGAAATCGCTGCTTTCTTTGCTCATGTCACGCATGAGACCGGAC ACTTTTGTTACATAGAAGAAATAGATGGTGCCTCTAAGGACTATTGCGATG
genomic: CAAGCGGGAAATCGCTGCTTTCTTTGCTCATGTCACGCATGAGACCGGACgtaagatcgc ... ttgtgtatagACTTTTGTTACATAGAAGAAATAGATGGTGCCTCTAAGGACTATTGCGATG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atcacataatgttattacatatgctttgtctaatgaagatattttttgtgtatagACTTTTGTTACATAGAAGAAATAGATGGTGCCTCTAAGGACTATTGCGATGAGAGCAACACACAGTACCCATGTGTAGCTGGAAAGGGTTACTATGGTCG
gtctaat putative branch site (score: 3)
tatttttt putative PPT
ataatgttattacata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagatcgcgatcccgttaattgaaaaaaccttatatttcaattatttgaaattaattttaatttttatcacataatgttattacatatgctttgtctaatgaagatattttttgtgtatagACTTTTGTTACATAGAAGAAATAGATGGTGCCTCTAAGGACTATTGCGATGAGAGCAACACACAGTACCCATGTGTAGCTGGAAAGGGTTACTATGGTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
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