1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttcgacaaactggtgttctttgttaggaatgatgtgcatgctgttaattattgccatggaagtcgattgttctaaatcttctttcattgtattatatcagATTCTTTTTAGCTGCTAGCTTCTGAGAGATAAACTTGCAGTAACGATGGAGAATACTCTTTTTGGGGACATATTTAAGGTCATTCAAATTGACCCAGATG
species | Vitis vinifera |
transcript | Vv05s0094g00120.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CACCCCTCTTCAATCCCTCTAGGGTTTTGGCATTTGAAGGTTTCGCAGTG ATTCTTTTTAGCTGCTAGCTTCTGAGAGATAAACTTGCAGTAACGATGGAGEST: gi|110380589|gb|EC945864.1|EC945864
genomic: CACCCCTCTTCAATCCCTCTAGGGTTTTGGCATTTGAAGGTTTCGCAGTGgttagtgctc ... attatatcagATTCTTTTTAGCTGCTAGCTTCTGAGAGATAAACTTGCAGTAACGATGGAG
EST: CACCCCGCTTCAATCCCTTTAGGGTTTTGGCATTTGAAGGTTTCGCAGTG ATTCTTTTTAGCTGCTAGCTTCTGAGAGATAAACTTGCAGTAACGATGGAGEST: gi|110413303|gb|EC979082.1|EC979082
genomic: CACCCCTCTTCAATCCCTCTAGGGTTTTGGCATTTGAAGGTTTCGCAGTGgttagtgctc ... attatatcagATTCTTTTTAGCTGCTAGCTTCTGAGAGATAAACTTGCAGTAACGATGGAG
EST: CACCCCTCTTCAATCCCTCTAGGGTTTTGGCATTTGAAGGTTTCGCAGTG ATTCTTTTTAGCTGCTAGCTTCTGAGAGATAAACTTGCAGTAACGATGGAGEST: gi|77582206|gb|DV220065.1|DV220065
genomic: CACCCCTCTTCAATCCCTCTAGGGTTTTGGCATTTGAAGGTTTCGCAGTGgttagtgctc ... attatatcagATTCTTTTTAGCTGCTAGCTTCTGAGAGATAAACTTGCAGTAACGATGGAG
EST: CACCCCGCTTCAATCCCTTTAGGGTTTTGGCATTTGAAGGTTTCGCAGTG ATTCTTTTTAGCTGCTAGCTTCTGAGAGATAAACTTGCAGTAACGATGGAGEST: gi|110420055|gb|EC986316.1|EC986316
genomic: CACCCCTCTTCAATCCCTCTAGGGTTTTGGCATTTGAAGGTTTCGCAGTGgttagtgctc ... attatatcagATTCTTTTTAGCTGCTAGCTTCTGAGAGATAAACTTGCAGTAACGATGGAG
EST: CACCCCTCTTCAATCCCTTTAGGGTTTTGGCATTTGTAGGTTTCGCAGTG ATTCTTTTTAGCTGCTAGCTTCTGAGAGATAAACTTGCAGTAACGATGGAGEST: gi|110400610|gb|EC967176.1|EC967176
genomic: CACCCCTCTTCAATCCCTCTAGGGTTTTGGCATTTGAAGGTTTCGCAGTGgttagtgctc ... attatatcagATTCTTTTTAGCTGCTAGCTTCTGAGAGATAAACTTGCAGTAACGATGGAG
EST: CACCCCGCTTCAATCCCTTTAGGGTTTTGGCATTTGAAGGTTTCGCAGTG ATTCTTTTTAGCTGCTAGCTTCTGAGAGATAAACTTGCAGTAACGATGGAGEST: gi|37187995|gb|CF607346.1|CF607346
genomic: CACCCCTCTTCAATCCCTCTAGGGTTTTGGCATTTGAAGGTTTCGCAGTGgttagtgctc ... attatatcagATTCTTTTTAGCTGCTAGCTTCTGAGAGATAAACTTGCAGTAACGATGGAG
EST: CATTTGAAGGTTTCGCAGTG ATTCTTTTTAGCTGCTAGCTTCTGAGAGATAAACTTGCAGTAACGATGGAG
genomic: CATTTGAAGGTTTCGCAGTGgttagtgctc ... attatatcagATTCTTTTTAGCTGCTAGCTTCTGAGAGATAAACTTGCAGTAACGATGGAG
aattattgccatggaagtcgattgttctaaatcttctttcattgtattatatcagATTCTTTTTAGCTGCTAGCTTCTGAGAGATAAACTTGCAGTAACGATGGAGAATACTCTTTTTGGGGACATATTTAAGGTCATTCAAATTGACCCAGATG
ttctaaa putative branch site (score: 2)
tttcattgtattatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcgacaaactggtgttctttgttaggaatgatgtgcatgctgttaattattgccatggaagtcgattgttctaaatcttctttcattgtattatatcagATTCTTTTTAGCTGCTAGCTTCTGAGAGATAAACTTGCAGTAACGATGGAGAATACTCTTTTTGGGGACATATTTAAGGTCATTCAAATTGACCCAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- -gacaaac
- - - - - tggtgtt
- - - - - - - - - - - - -ggaatga
- - - - - - - - - - - - - - - - - -gcatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - -ccatgga