Sequence
atgc intronic sequence ATGC exonic sequence...ggttagggtttttggatagcgcggtgcgtgtttgatactgttatggtaaattgtgttctgaattggattgtgtttttgatggtttctgatttaatttcagTTAGAGAGTCTTCCTTCGATGGTTGCTGGGGTTTGGTCGGATAATAGCAGTTTGCAGCTGGAGGCCACTACTCAGTTCCGGAAACTGCTTTCTATTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0077g01430.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA15G15480.1 (Glycine max), 3'ss of exon 1
----------------------------------------------------------------------------------------------ggttagggtttttggatagcgcggtgcgtgtttgatactgttat---ggtaaattgtgttctgaattggattgtgtttttgatggtttctgatttaatttcagTTAGAGAGTCTTCCTTCGATGGTTGCTGGGGTTTGGTCGGATAATAGCAGTTTGCAGCTGGAGGCCACTACTCAGTTCCGGAAACTGCTTTCTATTG
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gtaccacaatcgtgaaaaattagggttccgtcgtgatctcgaagtttcagattctgatgcttccgaattgcgatttccaatcgcgtttcggtgtgattgggattt--ggttaat-tagttagttattggaacggttataacgataggttgtatttgttgttg--ttgttgttgttgttgttggtggtggtggtgcagTTAGAGAGTCTTCCTGCGATGGTAGCTGGAGTGTGGTCGGATGATAACAGCCAGCAATTGGAAGCGACCACGCAGTTCCGGAAACTGCTTTCGATTG
upper sequence: Vv05s0077g01430.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA09G04430.1 (Glycine max), 3'ss of exon 1
------------------------------------------------------ggttagggtttttggatagcg---cggtgcgtgtttgatactgttat--ggtaaattgtgttctgaattggattgtgtttttgatggtttctgatttaatttcagTTAGAGAGTCTTCCTTCGATGGTTGCTGGGGTTTGGTCGGATAATAGCAGTTTGCAGCTGGAGGCCACTACTCAGTTCCGGAAACTGCTTTCTATTG
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gtatcgctatttttattgcaatcgtgaaaaattagggttccatcgcgatctcgcaatttcagattctaaatcgcgtttcggtgtgattgtgatttggttatttagttagttatggaaacggttatgatgattggttg-tgtttgttggtggtggtgcagTTAGAGAGTCTTCCTGCGATGGTTGCTGGAGTGTGGTCCGATGATAACAGCCAGCAACTGGAAGCGACCACGCAGTTTCGGAAACTGCTTTCGATTG
upper sequence: Vv05s0077g01430.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA07G37180.1 (Glycine max), 3'ss of exon 2
----------------------------------------------------------------ggttagggttt--ttggatagcgcggt-gcgtgtttgatactgttatggtaaattgtgttctgaattggattgtgtttttgatggtttctgatt----taatttcagTTAGAGAGTCTTCCTTCGATGGTTGCTGGGGTTTGGTCGGATAATAGCAGTTTGCAGCTGGAGGCCACTACTCAGTTCCGGAAACTGCTTTCTATTG
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gtacattctcgcttcctcttcttcttattcttattccattctctgttttcattgttttggtgcgacttagggttcgatcgcatggtttgctagggttttggatgttagttcctgtgatggtagttagttttagga-acgtttttgacggttattcgtgtctgttgttgcagTTAGAGAGTCTTCCTGCAATGGTTGCTGGAGTTTGGTCGAATGATAATAGTCTTCAACTTGAAGCCACCACGCAATTTCGCAAGCTGCTTTCGATTG
upper sequence: Vv05s0077g01430.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA17G03430.1 (Glycine max), 3'ss of exon 1
-------------------------------------------------------------------------------ggttagggtttttggatagcgcggtgcgtgtttgatactgttatggtaaattgtgttctgaattggattgtgtttttgatggtttctgatt-taatttcagTTAGAGAGTCTTCCTTCGATGGTTGCTGGGGTTTGGTCGGATAATAGCAGTTTGCAGCTGGAGGCCACTACTCAGTTCCGGAAACTGCTTTCTATTG
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gtacattctcgtttcttcttcttaattcctattccattctcttcacatttttttcctctgctttcattgtattagggttcgatcgcatggtttgatagggttttggatgttagttactgtgatggtggttagttttaggaac--gttttttttaatggttatccgtgtctgttgttgcagCTGGAGAGTCTTCCTGCCATGGTTGCTGGAGTTTGGTCGGATGATAATAGTATTCAACTTGAAGCCACTACGCAATTTCGCAAGCTGCTTTCGATTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtaaattgtgttctgaattggattgtgtttttgatggtttctgatttaatttcagTTAGAGAGTCTTCCTTCGATGGTTGCTGGGGTTTGGTCGGATAATAGCAGTTTGCAGCTGGAGGCCACTACTCAGTTCCGGAAACTGCTTTCTATTG
tttctgatttaattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ggttagggtttttggatagcgcggtgcgtgtttgatactgttatggtaaattgtgttctgaattggattgtgtttttgatggtttctgatttaatttcagTTAGAGAGTCTTCCTTCGATGGTTGCTGGGGTTTGGTCGGATAATAGCAGTTTGCAGCTGGAGGCCACTACTCAGTTCCGGAAACTGCTTTCTATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - tggatag
- - - - - - - - - - - - tgcgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - -tgtgttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggattg