Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agtgattaagtagccaaaggtcatgttcatacttagatctcaatctagtaaggtagattgtgttttttctggctgataatgtgtttgatcgatttggcagCATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATGGGGTGAAACCCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAG

Basic information

species Vitis vinifera
transcript Vv05s0077g01070.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71868324|gb|DT017379.1|DT017379
EST:     AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTC                         CATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
genomic: AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTCgtacgttcct ... gatttggcagCATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
EST: gi|110390636|gb|EC955556.1|EC955556
EST:     AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTC                         CATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
genomic: AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTCgtacgttcct ... gatttggcagCATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
EST: gi|26262048|gb|CA813111.1|CA813111
EST:     AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTC                         CATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
genomic: AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTCgtacgttcct ... gatttggcagCATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
EST: gi|110702564|gb|EE081424.1|EE081424
EST:     AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTC                         CATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
genomic: AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTCgtacgttcct ... gatttggcagCATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
EST: gi|110707481|gb|EE083930.1|EE083930
EST:     AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTC                         CATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
genomic: AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTCgtacgttcct ... gatttggcagCATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
EST: gi|110371152|gb|EC934947.1|EC934947
EST:     AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTC                         CATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
genomic: AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTCgtacgttcct ... gatttggcagCATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
EST: gi|110394618|gb|EC959809.1|EC959809
EST:     AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTC                         CATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
genomic: AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTCgtacgttcct ... gatttggcagCATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
EST: gi|110379108|gb|EC944284.1|EC944284
EST:     AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTC                         CATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
genomic: AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTCgtacgttcct ... gatttggcagCATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
EST: gi|110364312|gb|EC923847.1|EC923847
EST:     AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTC                         CATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
genomic: AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTCgtacgttcct ... gatttggcagCATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
EST: gi|351043949|gb|FQ431380.1|FQ431380
EST:     AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTC                         CATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
genomic: AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTCgtacgttcct ... gatttggcagCATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
EST: gi|349814131|gb|FQ414750.1|FQ414750
EST:     AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTC                         CATTAATTCCTTTGAGTGAGTTTTTTGACCCGATTATATCGAAGAAGTATG
genomic: AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTCgtacgttcct ... gatttggcagCATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
EST: gi|71868813|gb|DT017868.1|DT017868
EST:     AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTC                         CATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
genomic: AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTCgtacgttcct ... gatttggcagCATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
EST: gi|30251624|gb|CB969357.1|CB969357
EST:     AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTC                         CATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
genomic: AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTCgtacgttcct ... gatttggcagCATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
EST: gi|87584440|gb|DY473620.1|DY473620
EST:     AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTC                         CATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
genomic: AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTCgtacgttcct ... gatttggcagCATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
EST: gi|26267663|gb|CA818726.1|CA818726
EST:     AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTC                         CATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
genomic: AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTCgtacgttcct ... gatttggcagCATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
EST: gi|351043996|gb|FQ431427.1|FQ431427
EST:     AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTC                         CATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
genomic: AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTCgtacgttcct ... gatttggcagCATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
EST: gi|110369608|gb|EC933772.1|EC933772
EST:     AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTC                         CATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
genomic: AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTCgtacgttcct ... gatttggcagCATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
EST: gi|71873183|gb|DT022238.1|DT022238
EST:     AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTC                         CATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
genomic: AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTCgtacgttcct ... gatttggcagCATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
EST: gi|110379209|gb|EC944389.1|EC944389
EST:     AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTC                         CATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
genomic: AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTCgtacgttcct ... gatttggcagCATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
EST: gi|351022985|gb|FQ428894.1|FQ428894
EST:     AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTC                         CATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
genomic: AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTCgtacgttcct ... gatttggcagCATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
EST: gi|110688269|gb|EE066629.1|EE066629
EST:     AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTC                         CATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
genomic: AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTCgtacgttcct ... gatttggcagCATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
EST: gi|110385760|gb|EC950312.1|EC950312
EST:     AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTC                         CATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
genomic: AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTCgtacgttcct ... gatttggcagCATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
EST: gi|349807840|gb|FQ402231.1|FQ402231
EST:     AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTC                         CATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
genomic: AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTCgtacgttcct ... gatttggcagCATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
EST: gi|110361670|gb|EC925162.1|EC925162
EST:     AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTC                         CATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
genomic: AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTCgtacgttcct ... gatttggcagCATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
EST: gi|349827143|gb|FQ421416.1|FQ421416
EST:     AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTC                         CATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
genomic: AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTCgtacgttcct ... gatttggcagCATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
EST: gi|110393932|gb|EC959521.1|EC959521
EST:     AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTC                         CATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
genomic: AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTCgtacgttcct ... gatttggcagCATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
EST: gi|351032190|gb|FQ460447.1|FQ460447
EST:     AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTC                         CATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
genomic: AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTCgtacgttcct ... gatttggcagCATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
EST: gi|33406144|gb|CF211771.1|CF211771
EST:     AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTC                         CATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
genomic: AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTCgtacgttcct ... gatttggcagCATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
EST: gi|351016279|gb|FQ446139.1|FQ446139
EST:     AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTC                         CATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
genomic: AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTCgtacgttcct ... gatttggcagCATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
EST: gi|26265610|gb|CA816673.1|CA816673
EST:     AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTC                         CATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
genomic: AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTCgtacgttcct ... gatttggcagCATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
EST: gi|26261907|gb|CA812970.1|CA812970
EST:     AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTC                         CATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
genomic: AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTCgtacgttcct ... gatttggcagCATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
EST: gi|110705834|gb|EE083136.1|EE083136
EST:     AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTC                         CATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
genomic: AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTCgtacgttcct ... gatttggcagCATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
EST: gi|26263870|gb|CA814933.1|CA814933
EST:     AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTC                         CATTAATTCCTTTGAGTGAGTTTCCTGACCCGATTATATCGAAGAAGTATG
genomic: AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTCgtacgttcct ... gatttggcagCATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
EST: gi|349824196|gb|FQ417583.1|FQ417583
EST:     AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTC                         CATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
genomic: AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTCgtacgttcct ... gatttggcagCATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
EST: gi|110427794|gb|EC994245.1|EC994245
EST:     AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTC                         CATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
genomic: AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTCgtacgttcct ... gatttggcagCATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
EST: gi|110689056|gb|EE064944.1|EE064944
EST:     AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTC                         CATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
genomic: AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTCgtacgttcct ... gatttggcagCATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
EST: gi|110732453|gb|EE107755.1|EE107755
EST:     AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTC                         CATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
genomic: AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTCgtacgttcct ... gatttggcagCATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
EST: gi|33406236|gb|CF211863.1|CF211863
EST:     AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTC                         CATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
genomic: AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTCgtacgttcct ... gatttggcagCATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
EST: gi|110703478|gb|EE080357.1|EE080357
EST:     AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTC                         CATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
genomic: AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTCgtacgttcct ... gatttggcagCATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
EST: gi|22011106|gb|BQ796140.1|BQ796140
EST:     AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTC                         CATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
genomic: AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTCgtacgttcct ... gatttggcagCATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
EST: gi|110686402|gb|EE064002.1|EE064002
EST:     AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTC                         CATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
genomic: AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTCgtacgttcct ... gatttggcagCATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
EST: gi|110382944|gb|EC947277.1|EC947277
EST:     AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTC                         CATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
genomic: AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTCgtacgttcct ... gatttggcagCATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
EST: gi|351016984|gb|FQ424411.1|FQ424411
EST:     AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTC                         CATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
genomic: AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTCgtacgttcct ... gatttggcagCATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
EST: gi|110425553|gb|EC991941.1|EC991941
EST:     AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTC                         CATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
genomic: AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTCgtacgttcct ... gatttggcagCATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
EST: gi|110364750|gb|EC928233.1|EC928233
EST:     AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTC                         CATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
genomic: AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTCgtacgttcct ... gatttggcagCATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
EST: gi|30251571|gb|CB969304.1|CB969304
EST:     AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTC                         CATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
genomic: AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTCgtacgttcct ... gatttggcagCATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
EST: gi|110727022|gb|EE103339.1|EE103339
EST:     AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTC                         CATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
genomic: AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTCgtacgttcct ... gatttggcagCATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
EST: gi|110367443|gb|EC931376.1|EC931376
EST:     AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTC                         CATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
genomic: AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTCgtacgttcct ... gatttggcagCATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
EST: gi|351019348|gb|FQ429508.1|FQ429508
EST:     AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTC                         CATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
genomic: AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTCgtacgttcct ... gatttggcagCATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
EST: gi|34320492|gb|CF373246.1|CF373246
EST:     AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTC                         CATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG
genomic: AGGACACTACGAAGAGGGCGAGATGCAGCTCTGGGAAACCACCGGTTCTCgtacgttcct ... gatttggcagCATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagtaaggtagattgtgttttttctggctgataatgtgtttgatcgatttggcagCATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATGGGGTGAAACCCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAG
               tgtttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
agtgattaagtagccaaaggtcatgttcatacttagatctcaatctagtaaggtagattgtgttttttctggctgataatgtgtttgatcgatttggcagCATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATGGGGTGAAACCCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA
- - - - - -agccaaa
- - - - - - - - - - -catgttc