Sequence
atgc intronic sequence ATGC exonic sequence...ctttataagcacagacccacttctcaataccaccagcaaaagaagagaaacaaaagagagagtgatctgtatattgtagtactgatctggagtgatggagGCATTCGGGAAGCTTGCAATAGTGGCTCTAGTGTTGGCATCTTTGGCCAGCAGCAATGCCCAGACCATATGCAACATGTCCGGGGAGGGTCTGATGGCAT
Basic information
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agaaacaaaagagagagtgatctgtatattgtagtactgatctggagtgatggagGCATTCGGGAAGCTTGCAATAGTGGCTCTAGTGTTGGCATCTTTGGCCAGCAGCAATGCCCAGACCATATGCAACATGTCCGGGGAGGGTCTGATGGCAT
tactgat putative branch site (score: 2)
tatattgta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctttataagcacagacccacttctcaataccaccagcaaaagaagagaaacaaaagagagagtgatctgtatattgtagtactgatctggagtgatggagGCATTCGGGAAGCTTGCAATAGTGGCTCTAGTGTTGGCATCTTTGGCCAGCAGCAATGCCCAGACCATATGCAACATGTCCGGGGAGGGTCTGATGGCAT
- - - aagcaca
- - - - - - - -cccactt
- - - - - - - - - - - - - - accacca
- - - - - - - - - - - - - - - - - - -aaaagaa
- - - - - - - - - - - - - - - - - - - - - - - -aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - agagaga