1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tttgggcagcaaaaggtttacaagctctttgtagtattttaattttttttattagtgggttagttgcattctctgttatttatttaaattgctgttgcagTTGAATTTTCAAAAGCAATGGCTGGCAGAGCTCAAATCCCCACTAAAAGCTCGGCACTCATTGCTATGATTGCTGATGAG
species | Vitis vinifera |
transcript | Vv05s0062g00210.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CATACCTGCGTTTCGATCCATCTCTGAGTTCAAG TTGAATTTTCAAAAGCAATGGCTGGCAGAGCTCAAATCCCCACTAAAAGCTEST: gi|110384574|gb|EC949021.1|EC949021
genomic: CATACCTGCGTTTCGATCCATCTCTGAGTTCAAGgtactgctcc ... gctgttgcagTTGAATTTTCAAAAGCAATGGCTGGCAGAGCTCAAATCCCCACTAAAAGCT
EST: CAATAATTTTCTTCTCCATACCTGCGTTTCGATCCATCTCTGAGTTCAAG TTGAATTTTCAAAAGCAATGGCTGGCAGAGCTCAAATCCCCACTAAAAGCTEST: gi|110425951|gb|EC992347.1|EC992347
genomic: CAATAA-TTTCTTCTCCATACCTGCGTTTCGATCCATCTCTGAGTTCAAGgtactgctcc ... gctgttgcagTTGAATTTTCAAAAGCAATGGCTGGCAGAGCTCAAATCCCCACTAAAAGCT
EST: TCAATAATTTCTTCTCCATACCTGCGTTTCGATCCATCTCTGAGTTCAAG TTGAATTTTCAAAAGCAATGGCTGGCAGAGCTCAAATCCCCACTAAAAGCTEST: gi|26264288|gb|CA815351.1|CA815351
genomic: TCAATAATTTCTTCTCCATACCTGCGTTTCGATCCATCTCTGAGTTCAAGgtactgctcc ... gctgttgcagTTGAATTTTCAAAAGCAATGGCTGGCAGAGCTCAAATCCCCACTAAAAGCT
EST: TCAACAATTTCTTCTCCATACCTGCGTTTCGATCCATCTCTGAGTTCAAG TTGAATTTTCAAAAGCAATGGCTGGCAGAGCTCAAATCCCCACTAAAAGCTEST: gi|34543784|gb|CF512016.1|CF512016
genomic: TCAATAATTTCTTCTCCATACCTGCGTTTCGATCCATCTCTGAGTTCAAGgtactgctcc ... gctgttgcagTTGAATTTTCAAAAGCAATGGCTGGCAGAGCTCAAATCCCCACTAAAAGCT
EST: TAATTTCTTCTCCATACCTGCGTTTCGATCCATCTCTCATTTCAAG TTGAATTTTCAAAAGCAATGGCTGGCAGAGCTCAAATCCCCACTAAAAGCTEST: gi|26266198|gb|CA817261.1|CA817261
genomic: TAATTTCTTCTCCATACCTGCGTTTCGATCCATCTCTGAGTTCAAGgtactgctcc ... gctgttgcagTTGAATTTTCAAAAGCAATGGCTGGCAGAGCTCAAATCCCCACTAAAAGCT
EST: TCAACAATTTCTTCTCCATACCTGCGTTTCGATCCATCTCTGAGTTCAAG TTGAATTTTCAAAAGCAATGGCTGGCAGAGCTCAAATCCCCACTAAAAGCTEST: gi|27583949|gb|CB006644.1|CB006644
genomic: TCAATAATTTCTTCTCCATACCTGCGTTTCGATCCATCTCTGAGTTCAAGgtactgctcc ... gctgttgcagTTGAATTTTCAAAAGCAATGGCTGGCAGAGCTCAAATCCCCACTAAAAGCT
EST: TGCGTTTCGATCCATCTCTGAGTTCAAG TTGAATTTTCAAAAGCAATGGCTGGCAGAGCTCAAATCCCCACTAAAAGCTEST: gi|110687266|gb|EE064524.1|EE064524
genomic: TGCGTTTCGATCCATCTCTGAGTTCAAGgtactgctcc ... gctgttgcagTTGAATTTTCAAAAGCAATGGCTGGCAGAGCTCAAATCCCCACTAAAAGCT
EST: TCAATAATTTCTTCTCCATACCTGCGTTTCGATCCATCTCTGAGTTCAAG TTGAATTTTCAAAAGCAATGGCTGGCAGAGCTCAAATCCCCACTAAAAGCTEST: gi|37188187|gb|CF607536.1|CF607536
genomic: TCAATAATTTCTTCTCCATACCTGCGTTTCGATCCATCTCTGAGTTCAAGgtactgctcc ... gctgttgcagTTGAATTTTCAAAAGCAATGGCTGGCAGAGCTCAAATCCCCACTAAAAGCT
EST: CAATAATTTCTTCTCCATACCTGCGTTTCGATCCATCTCTGAGTTCAAG TTGAATTTTCAAAAGCAATGGCTGGCAGAGCTCAAATCCCCACTAAAAGCT
genomic: CAATAATTTCTTCTCCATACCTGCGTTTCGATCCATCTCTGAGTTCAAGgtactgctcc ... gctgttgcagTTGAATTTTCAAAAGCAATGGCTGGCAGAGCTCAAATCCCCACTAAAAGCT
tttttattagtgggttagttgcattctctgttatttatttaaattgctgttgcagTTGAATTTTCAAAAGCAATGGCTGGCAGAGCTCAAATCCCCACTAAAAGCTCGGCACTCATTGCTATGATTGCTGATGAG
attctctgttatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgggcagcaaaaggtttacaagctctttgtagtattttaattttttttattagtgggttagttgcattctctgttatttatttaaattgctgttgcagTTGAATTTTCAAAAGCAATGGCTGGCAGAGCTCAAATCCCCACTAAAAGCTCGGCACTCATTGCTATGATTGCTGATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - -gcagcaa
- - - - - - - - - -acaagct
- - - - - - - - - - - - - - - - - - - - - - - - - - - gtgggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcattct