Sequence
atgc intronic sequence ATGC exonic sequence...tttggcagttgtcaggagctatggattttggtggagaatatagttttctagcactcattcggcaattttcaaatggaaatctgactgctttctttgtcagGTGTGATTTGATTATAACTGCGAATGGGAAGACGGAGAAAATCGCTTCAGGTTTGCTGAATCCTTTTCTTGCCCACTTGAAGACTGCTCAGGATCAGATT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0049g01280.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA20G35020.1 (Glycine max), 3'ss of exon 1
tttggcagttgtcaggagctatggattttggtggagaatatagttttctagcactcattcggcaat--tttcaaatggaaatctgactgctttctttgtcagGTGTGATTTGATTATAACTGCGAATGGGAAGACGGAGAAAATCGCTTCAGGTTTGCTGAATCCTTTTCTTGCCCACTTGAAGACTGCTCAGGATCAGATT
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-----------gtaatagataaatacttttatgt-gaatgttcattgaaaacatttacatgtttatagccttacttgtgggtttgattcttctataaatcagGTTTGACTTGATTATAACTGTGAATGGAAAGAAGGAGAAGATTGCCTCAGGCTTGCTCAACCCTTTTCTTTCCCACTTGAAGGCTGCTCAGAATCAGATG
upper sequence: Vv05s0049g01280.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA10G00660.1 (Glycine max), 3'ss of exon 1
-tttggcagttgtcaggagctatggattttggtggagaatatagttttctagcactcattcggcaattttcaaatggaaatctgactgc-tttctttgtcagGTGTGATTTGATTATAACTGCGAATGGGAAGACGGAGAAAATCGCTTCAGGTTTGCTGAATCCTTTTCTTGCCCACTTGAAGACTGCTCAGGATCAGATT
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aattgatctatacaaaagctcatccaaaacgatggtcatgggtattttctgct--tgacttgttgatttgatttttcaccctcctctctatatctaaatcagGTTTGACTTGTTTATAACTGTGAATGGAAAGAAGGAGAAAGTCGCGTCGGGTTTGCTCAAACCATTTCTATCCCACTTGAAGGCTGCTCAAGATCAAATA
upper sequence: Vv05s0049g01280.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA02G00690.1 (Glycine max), 3'ss of exon 1
tttggcagttgtcaggagctatggattttggtggagaatatagttttctagcactcatt---cggcaattttcaaatggaaatctga--ctgctttctttgtcagGTGTGATTTGATTATAACTGCGAATGGGAAGACGGAGAAAATCGCTTCAGGTTTGCTGAATCCTTTTCTTGCCCACTTGAAGACTGCTCAGGATCAGATT
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-----cactaattgatctatgcaaaagctcattaaaaacgatggttgtaggtgttcgctgcctgacttgtttgatttgatttttttaccctcctctctaaatcagGTTTGACTTGGTTATAACTGTGAATGGAAAGAAGGAGAAAGTTGCCTCGGGTTTGCTCAACCCATTTCTATCCCACTTGAAGGCTGCTCAAGATCAAATAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122691481|gb|EC978576.1|EC978576EST: TCGACTCTGCTGGACTCGGCTGTTTTCCAGCTAACACCGACTCGGACCAG GTGTGATTTGATTATAACTGCGAATGGGAAGACGGAGAAAATCGCTTCAGG
genomic: TCGACTCTGCTGGACTCGGCTGTTTTCCAGCTAACACCGACTCGGACCAGgtaaagtttc ... tctttgtcagGTGTGATTTGATTATAACTGCGAATGGGAAGACGGAGAAAATCGCTTCAGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttctagcactcattcggcaattttcaaatggaaatctgactgctttctttgtcagGTGTGATTTGATTATAACTGCGAATGGGAAGACGGAGAAAATCGCTTCAGGTTTGCTGAATCCTTTTCTTGCCCACTTGAAGACTGCTCAGGATCAGATT
atctgac putative branch site (score: 3)
ctgctttctttgtc CT-rich tract
aattttcaaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttggcagttgtcaggagctatggattttggtggagaatatagttttctagcactcattcggcaattttcaaatggaaatctgactgctttctttgtcagGTGTGATTTGATTATAACTGCGAATGGGAAGACGGAGAAAATCGCTTCAGGTTTGCTGAATCCTTTTCTTGCCCACTTGAAGACTGCTCAGGATCAGATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - ctatgga
- - - - - - - - - - - - - - tggtgga
- - - - - - - - - - - - - - - - - - - - - - - - - -cactcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgactgc