Sequence
atgc intronic sequence ATGC exonic sequence...ttactttttctcctattgcttctagtattgtttttctacaattatgtgaaattccttccttcatgctttgtgtttatgctaagtttctatgcttttatagTGATTTTTGGGGAGATAGCTAATTTTGCTGCTTATGCATTTGCTCCTGCAATTCTTGTAACCCCTTTGGGAGCTCTAAGCATTATTTTCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0029g00620.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA05G28580.1 (Glycine max), 3'ss of exon 3
--ttactttttctcctattgctt-ctagtattgt----ttttctacaattatgtgaaattccttccttcatgctttgtgtttatgctaagtttctatgcttttatagTGATTTTTGGGGAGATAGCTAATTTTGCTGCTTATGCATTTGCTCCTGCAATTCTTGTAACCCCTTTGGGAGCTCTAAGCATTATTTTCAG
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tagtactcttataactataaataactaatttgctaatgtccgcgacaatcttatgaaaatttcatcaactaattctatatgtatgct-------tacatttttgtagTGATTGTTGGGGAAGTAGCCAATTTTGCAGCTTATGCATTTGCTCCTGCACTACTTGTAACTCCTTTGGGAGCTTTAAGTATCATTTTCAG
upper sequence: Vv05s0029g00620.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA11G36550.1 (Glycine max), 3'ss of exon 3
---ttactttttctcctattgcttctagtattgtttttctacaattatgtgaaattccttccttcatgctttgtgtttatgctaagtttctatgcttttatagTGATTTTTGGGGAGATAGCTAATTTTGCTGCTTATGCATTTGCTCCTGCAATTCTTGTAACCCCTTTGGGAGCTCTAAGCATTATTTTCAG
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ttgtgacgtaaacgtccg--gatccttgtctctatttccactgatattgagaaaacttcttcaagacatatattacctaaaatcacatcatgca-ttttgtagTGATCGCTGGGGAAATAGCCAATTTTGCAGCTTATGCGTTCGCTCCTGCAATCCTTGTAACTCCTTTGGGAGCTTTGAGCATCATTTTCAG
upper sequence: Vv05s0029g00620.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT4G13800.1 (Arabidopsis thaliana), 3'ss of exon 2
---ttactttttctcctattgcttctagtattgtttttctacaatt-atgtgaaattccttccttcatgctttgtgtttatgctaagtttctatgcttttatagTGATTTTTGGGGAGATAGCTAATTTTGCTGCTTATGCATTTGCTCCTGCAATTCTTGTAACCCCTTTGGGAGCTCTAAGCATTATTTTCAG
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ttgggacatgttttggaatccaagtttctattggatttaatcaatggacatcaaactttggttatgataactaatatt-gtattca--tacta-attcttatagTGATTGTTGGGGAGATAGCCAATTTTGCAGCATATGCATTTGCACCGGCTATTCTAGTAACACCTTTGGGAGCTTTAAGTATTATTTTCAG
upper sequence: Vv05s0029g00620.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT3G23870.1 (Arabidopsis thaliana), 3'ss of exon 2
ttactttttctcctattgcttctagtattgtttttctacaattatgtgaaattccttccttcatgctttgtgtttatgctaagtttctatgctttta---tagTGATTTTTGGGGAGATAGCTAATTTTGCTGCTTATGCATTTGCTCCTGCAATTCTTGTAACCCCTTTGGGAGCTCTAAGCATTATTTTCAG
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--------------------------gtaagtcttatcaaattctgcaaaaatgttt---tagtgatcattgactaaacatgtgttttgttctcttaatttagTGATTGTTGGGGAAGTAGCTAATTTTGCAGCCTATGCATTTGCACCGGCTATTTTGGTAACACCTTTGGGAGCTTTAAGTATTATATTCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtgaaattccttccttcatgctttgtgtttatgctaagtttctatgcttttatagTGATTTTTGGGGAGATAGCTAATTTTGCTGCTTATGCATTTGCTCCTGCAATTCTTGTAACCCCTTTGGGAGCTCTAAGCATTATTTTCAG
tgctttt CT-rich tract
ttttata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttactttttctcctattgcttctagtattgtttttctacaattatgtgaaattccttccttcatgctttgtgtttatgctaagtttctatgcttttatagTGATTTTTGGGGAGATAGCTAATTTTGCTGCTTATGCATTTGCTCCTGCAATTCTTGTAACCCCTTTGGGAGCTCTAAGCATTATTTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - tttctcc
- - - - - - - - tgcttct