1 5' 3' | 2 5' 3' | 3 5' 3' |
...aatgtaatatacaatttataacaagtgaactatgcattatagttggagttcattgacattgataacatctgattcttgtagtatttttttttgttgttagTATAACTGTTGGTGAAAGTGAAAATTTCTTGAAAGAGATAAGCCAACCAATTCTCCTAGTTGAATCAAAGGGTCATGCCCTCCATGCTTTTGTGAATCAA
species | Vitis vinifera |
transcript | Vv05s0029g00100.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
gagttcattgacattgataacatctgattcttgtagtatttttttttgttgttagTATAACTGTTGGTGAAAGTGAAAATTTCTTGAAAGAGATAAGCCAACCAATTCTCCTAGTTGAATCAAAGGGTCATGCCCTCCATGCTTTTGTGAATCAA
tttttttttgttgtt CT-rich tract
attcttgtagtatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatgtaatatacaatttataacaagtgaactatgcattatagttggagttcattgacattgataacatctgattcttgtagtatttttttttgttgttagTATAACTGTTGGTGAAAGTGAAAATTTCTTGAAAGAGATAAGCCAACCAATTCTCCTAGTTGAATCAAAGGGTCATGCCCTCCATGCTTTTGTGAATCAA
- - - - - - - - -ataacaa
- - - - - - - - - - - - - - -ctatgca
- - - - - - - - - - - - - - - - - - - -tagttgg
- - - - - - - - - - - - - - - - - - - - - - - - - cattgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gataaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgattc