1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ctttcagatgtacatgtatgcatgcaaagacaacatgtttctaagtgtgtactactgcttagagtctgactttatcttctgattttttttctttcctcagATTGATGAGCTATCAAATTTCTCTGATACACCTTCCCCATCAGTAACCAGGATTCTGTACAGCAAGATGGATGTATTCGCTCGCAG
species | Vitis vinifera |
transcript | Vv05s0020g04900.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGATACCGTTTCTTCCTTCTCTGTCGATGCCCAAGGTTTACAGAAACAG ATTGATGAGCTATCAAATTTCTCTGATACACCTTCCCCATCAGTAACCAGGEST: gi|161720481|gb|FC070593.1|FC070593
genomic: TCGATGCCGTCTCTTCCTTCTCTGTCGATGCCCAAGGTTTACAGAAACAGgtatgacggg ... ctttcctcagATTGATGAGCTATCAAATTTCTCTGATACACCTTCCCCATCAGTAACCAGG
EST: TCGATACCGTTTCTTCCTTCTCTGTCGATGCCCAAGGTTTACAGAAACAG ATTGATGATCTATCAAATTTCTCTGATACACCTTCCCCATCAGTAACCAGGEST: gi|37184125|gb|CF603479.1|CF603479
genomic: TCGATGCCGTCTCTTCCTTCTCTGTCGATGCCCAAGGTTTACAGAAACAGgtatgacggg ... ctttcctcagATTGATGAGCTATCAAATTTCTCTGATACACCTTCCCCATCAGTAACCAGG
EST: TCGATACCGTTTCTTCCTTCTCTGTCGATGCCCAAGGTTTACAGAAACAG ATTGATGAGCTATCAAATTTCTCTGATACACCTTCCCCATCAGTAACCAGGEST: gi|161719418|gb|FC067665.1|FC067665
genomic: TCGATGCCGTCTCTTCCTTCTCTGTCGATGCCCAAGGTTTACAGAAACAGgtatgacggg ... ctttcctcagATTGATGAGCTATCAAATTTCTCTGATACACCTTCCCCATCAGTAACCAGG
EST: TCGATACCGTCTCTTCCTTCTCTGTCGATGCCCAAGGTTTACAGAAACAG ATTGATGAGCTATCAAATTTCTCTGATACACCTTCCCCATCAGTAACCAGGEST: gi|27582780|gb|CB005475.1|CB005475
genomic: TCGATGCCGTCTCTTCCTTCTCTGTCGATGCCCAAGGTTTACAGAAACAGgtatgacggg ... ctttcctcagATTGATGAGCTATCAAATTTCTCTGATACACCTTCCCCATCAGTAACCAGG
EST: TCGATACCGTTTCTTCCTTCTCTGTCGATGCCCAAGGTTTACAGAAACAG ATTGATGAGCTATCAAATTTCTCTGATACACCTTCCCCATCAGTAACCAGG
genomic: TCGATGCCGTCTCTTCCTTCTCTGTCGATGCCCAAGGTTTACAGAAACAGgtatgacggg ... ctttcctcagATTGATGAGCTATCAAATTTCTCTGATACACCTTCCCCATCAGTAACCAGG
tgtgtactactgcttagagtctgactttatcttctgattttttttctttcctcagATTGATGAGCTATCAAATTTCTCTGATACACCTTCCCCATCAGTAACCAGGATTCTGTACAGCAAGATGGATGTATTCGCTCGCAG
ttctgat putative branch site (score: 3)
tctgactttatcttct CT-rich tract
tgattttttttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctttcagatgtacatgtatgcatgcaaagacaacatgtttctaagtgtgtactactgcttagagtctgactttatcttctgattttttttctttcctcagATTGATGAGCTATCAAATTTCTCTGATACACCTTCCCCATCAGTAACCAGGATTCTGTACAGCAAGATGGATGTATTCGCTCGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - -gtacatg
- - - - - - - - - -gcatgca
- - - - - - - - - - - - - - - caacatg
- - - - - - - - - - - - - - - - - - - - - - - - - -ctactgc