Sequence
atgc intronic sequence ATGC exonic sequence...taatgattcgaacttaagggaataggaaaattccaatatgagttgggatttagctaaatggtttatggttggtaattgatgcatttaccgtatgccatagGTACGTGGCATGTTCTATCATGCGTTTGATGGATATATGGAGAATGCTTTTCCTTTAGATGAATTAAGACCTCTGACATGCGAGGGAGAAGACACACTAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g04650.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G173868_T02 (Zea mays), 3'ss of exon 1
taatgattcgaacttaagggaataggaaaattccaatat-gagttgggatttagctaaatggtttat--ggttggtaattgat--gcatttaccgtatgcca--tagGTACGTGGCATGTTCTATCATGCGTTTGATGGATATATGGAGAATGCTTTTCCTTTAGATGAATTAAGACCTCTGACATGCGAGGGAGAAGACACACTAG
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-------tcatacctacaaggacaagctagccttgttgttgaccccttattttatggcaagatttatttgcttaaacactggctaaaaaatagcatctttcatgtagGTGAAAGATATGTTCTATCATGCGTTTGATGGATACATGAAGTATGCTTTCCCACTCGATGAGCTGCGGCCCTTAAGTTGCCAAG---------------
upper sequence: Vv05s0020g04650.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G020359_T02 (Zea mays), 3'ss of exon 1
taatgattcgaacttaagggaataggaaaattccaatat-gagttgggatttagctaaatggtttat--ggttggtaattgat--gcatttaccgtatgccat--agGTACGTGGCATGTTCTATCATGCGTTTGATGGATATATGGAGAATGCTTTTCCTTTAGATGAATTAAGACCTCTGACATGCGAGGGAGAAGACACACTAG
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-------tcatacctacaaggacaagctagccttgttgttgaccccttattttatggcaagatttatttgcttaaacactggctaaaaaatagcatctttcatgtagGTGAAAGATATGTTCTATCATGCGTTTGATGGATACATGAAGTATGCTTTCCCACTCGATGAGCTGCGGCCCTTAAGTTGCCAAGGTGAAGACTCCCTTG
upper sequence: Vv05s0020g04650.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT5G43710.1 (Arabidopsis thaliana), 3'ss of exon 1
--taatgattcgaacttaagggaataggaaaattccaa-tatgagttgggatttagctaaatggtttatggttggtaattgatgcatttaccgtatgccatagGTACGTGGCATGTTCTATCATGCGTTTGATGGATATATGGAGAATGCTTTTCCTTTAGATGAATTAAGACCTCTGACATGCGAGGGAGAAGACACACTAG
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actagctgagatcacttggtttgatagtggagttgcagctttgacctttttgttcgataattaccttat--ttgatgatgggtttgatcacattgagt-gtagGTACGTGGGATGTTTTATCATGCCTTTGATGGATATATGAACAATGCGTTTCCACTCGATGAATTGAGACCGTTATCTTGCCAAGGAGAAGATACTCTTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggatttagctaaatggtttatggttggtaattgatgcatttaccgtatgccatagGTACGTGGCATGTTCTATCATGCGTTTGATGGATATATGGAGAATGCTTTTCCTTTAGATGAATTAAGACCTCTGACATGCGAGGGAGAAGACACACTAG
taattgat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
taatgattcgaacttaagggaataggaaaattccaatatgagttgggatttagctaaatggtttatggttggtaattgatgcatttaccgtatgccatagGTACGTGGCATGTTCTATCATGCGTTTGATGGATATATGGAGAATGCTTTTCCTTTAGATGAATTAAGACCTCTGACATGCGAGGGAGAAGACACACTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - -aagggaa
- - - - - - - - - - - - ggaaaat
- - - - - - - - - - - - - - - - - - - -gagttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatgcat