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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtggtgatttgcattcatgcggttaggctttgtttttcgtttctgtgtttgtaagagggtgaatatgttactgtaagaggtgttttccgatggaggatcggcggtttctgcttttcacgggctaggacggtatgttccgtaaattgagaaagaaacggagggcaattgagtcataatttgaggtgtttggttgcagGAGAGAGAGTCGGTGCATTTGGATGGTTTGTTTCCGGCGTATGGACATGTACAGTCTCTCTCCGTCCGACCCGCCGTTCCTCAGGTTCACCAG

Basic information

species Vitis vinifera
transcript Vv05s0020g04620.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349808681|gb|FQ405825.1|FQ405825
EST:     GCGAGCGGTTTCGAGATGACGTTGATGCCAGAGGTTCTTCAGGGAGGAGC                         GAGAGAGAGTCGGTGCATTTGGATGGTTTGTTTCCGGCGTATGGACATGTA
genomic: GCGAGCGGTTTCGAGATGACGTTGATGCCAGAGGTTCTTCAGGGAGGAGCgtaagtggtg ... ttggttgcagGAGAGAGAGTCGGTGCATTTGGATGGTTTGTTTCCGGCGTATGGACATGTA
EST: gi|37186422|gb|CF605775.1|CF605775
EST:     GCGAGCGGTTTCGAGATGACGTTGATGCCAGAGGTTCTTCAGGGAGGAGC                         GAGAGAGAGTCGGTGCATTTGGATGGTTTGTTTCCGGCGTATGGACATGTA
genomic: GCGAGCGGTTTCGAGATGACGTTGATGCCAGAGGTTCTTCAGGGAGGAGCgtaagtggtg ... ttggttgcagGAGAGAGAGTCGGTGCATTTGGATGGTTTGTTTCCGGCGTATGGACATGTA
EST: gi|110701293|gb|EE078706.1|EE078706
EST:     GCGAGCGGTTTCGAGATGACGTTGATGCCAGAGGTTCTTCAGGGAGGAGC                         GAGAGAGAGTCGGTGCATTTGGATGGTTTGTTTCCGGCGTATGGACATGTA
genomic: GCGAGCGGTTTCGAGATGACGTTGATGCCAGAGGTTCTTCAGGGAGGAGCgtaagtggtg ... ttggttgcagGAGAGAGAGTCGGTGCATTTGGATGGTTTGTTTCCGGCGTATGGACATGTA
EST: gi|352795241|gb|FQ476356.1|FQ476356
EST:     GCGAGCGGTTTCGAGATGACGTTGATGCCAGAGGTTCTTCAGGGAGGAGC                         GAGAGAGAGTCGGTGCATTTGGATGGTTTGTTTCCGGCGTATGGACATGTA
genomic: GCGAGCGGTTTCGAGATGACGTTGATGCCAGAGGTTCTTCAGGGAGGAGCgtaagtggtg ... ttggttgcagGAGAGAGAGTCGGTGCATTTGGATGGTTTGTTTCCGGCGTATGGACATGTA
EST: gi|110718182|gb|EE094719.1|EE094719
EST:     GCGAGCGGTTTCGAGATGACGTTGATGCCAGAGGTTCTTCAGGGAGGAGC                         GAGAGAGAGTCGGTGCATTTGGATGGTTTGTTTCCGGCGTATGGACATGTA
genomic: GCGAGCGGTTTCGAGATGACGTTGATGCCAGAGGTTCTTCAGGGAGGAGCgtaagtggtg ... ttggttgcagGAGAGAGAGTCGGTGCATTTGGATGGTTTGTTTCCGGCGTATGGACATGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattgagaaagaaacggagggcaattgagtcataatttgaggtgtttggttgcagGAGAGAGAGTCGGTGCATTTGGATGGTTTGTTTCCGGCGTATGGACATGTACAGTCTCTCTCCGTCCGACCCGCCGTTCCTCAGGTTCACCAG
                             tcataattt  TA-rich tract