Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttcttgttgctttcttcccaacttaccacttgactttatccctcttttcacttggcatatcggttgctgattgtgatctatctcctctttttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGAGAATGTTGCTCTTCTTAAGCAACAGTATGGGTTAAACAAAACAGCAAAT

Basic information

species Vitis vinifera
transcript Vv05s0020g04160.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g04160.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA10G38840.1 (Glycine max), 3'ss of exon 1
tttcttgttgc---tttcttcccaacttaccacttgactttatccctcttttcacttggcatatcggttgctgattgtgatctatctcctctttttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGAGAATGTTGCTCTTCTTAAGCAACAGTATGGGTTAAACAAAACAGCAAAT
|||  ||  |    ||   | | |    | |   | |  || |      || | |||  |   | |       |||   || |   |  |||| | ||| |||  |||||||||| |||||||| || ||||| ||||||||||| ||| ||||||||||||||   ||||||||||| ||||| || ||||||||||||| |
ttttatgaaggaaattagatgctataaaagcctataaagttgttaaagattactcttttc---ttgaaaatcaattaatatgttggttgtcttatgttggcagGCTGTTTGCAGTCGTGGATGACATTTTCTGTTTGTTTCAAGGTCATCTTGAGAATGTTGCTAACCTTAAGCAACAATATGGATTGAACAAAACAGCAACT

upper sequence: Vv05s0020g04160.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA20G28930.1 (Glycine max), 3'ss of exon 1
--tttcttgttgctttcttcccaacttaccact-tgactttatccctcttttcacttggcatatcggttgctgattgtgatctatctcctctttttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGAGAATGTTGCTCTTCTTAAGCAACAGTATGGGTTAAACAAAACAGCAAAT
  |    || || | |      || |    ||| | |  ||        |   ||||  |   | |       | |   || | | |  | || | |||||||  |||||||||||||||| || || ||||| ||||||||||| ||  |||||||||||||    ||||||||||| ||||| || ||||||||||||| |
tataatctgatgttatgaaagaaattagatactataaagttggtaaagatagtacttttc---ttgaaaatcaactaatatgtttgttttgttatgttgtcagGCTGTTTGCAGTTGTGGACGACATTTTCTGTTTGTTTCAAGGTCACCTTGAGAATGTTGCCAACCTTAAGCAACAATATGGATTGAACAAAACAGCAACT

upper sequence: Vv05s0020g04160.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT3G22850.1 (Arabidopsis thaliana), 3'ss of exon 1
-----tttcttgttgctttcttcccaacttaccacttgactttatccctcttttcacttggcatatcggttgctgattgtgatctatctcctctttttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGAGAATGTTGCTCTTCTTAAGCAACAGTATGGGTTAAACAAAACAGCAAAT
     |   ||||||   | ||   ||  |        |||  |    | |  | |  |    |   |||   |  ||   | | || |  | | | | || |||||||||||| || ||||||||||| |||||| | || ||||||||||| ||||| ||| |  ||||||||||||| |||||  ||| ||||||||| |  
atatctactttgttgtgatgtttaaaatgtgttga--aactggaaggatgtgattagataa-gtggtggtgattttttcaaaacaattt--tgtgtgtgtgacagATTGTTTGCTGTGGTGGATGATATGTTCTGCATATTCCAAGGACATATAGAGAACGTTCCAATTCTTAAGCAACAATATGGACTAACCAAAACAGCTACA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30128667|gb|CB914006.1|CB914006
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|161714833|gb|FC063281.1|FC063281
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|161706213|gb|FC054971.1|FC054971
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|110398107|gb|EC964229.1|EC964229
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|110395495|gb|EC961161.1|EC961161
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|110413953|gb|EC979772.1|EC979772
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|37184045|gb|CF603399.1|CF603399
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|110392675|gb|EC956897.1|EC956897
EST:     GCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: GCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|30304294|gb|CB981088.1|CB981088
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|110722819|gb|EE099425.1|EE099425
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|110390441|gb|EC955350.1|EC955350
EST:     CCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTG
genomic: CCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTT-CCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTG
EST: gi|110720299|gb|EE096101.1|EE096101
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|71871976|gb|DT021031.1|DT021031
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|110368629|gb|EC932617.1|EC932617
EST:     TACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: TACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|110398374|gb|EC964689.1|EC964689
EST:     GATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: GATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|110693244|gb|EE069306.1|EE069306
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|110390708|gb|EC955632.1|EC955632
EST:     CCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTG
genomic: CCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCC-AAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTG
EST: gi|294965335|gb|GW837050.1|GW837050
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|71866119|gb|DT015174.1|DT015174
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|33404399|gb|CF210026.1|CF210026
EST:     CTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: CTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|161708987|gb|FC060932.1|FC060932
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|110719147|gb|EE096788.1|EE096788
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|37184071|gb|CF603425.1|CF603425
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|110719525|gb|EE094727.1|EE094727
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|77587231|gb|DV222749.1|DV222749
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTAA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|110689126|gb|EE065077.1|EE065077
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|26263940|gb|CA815003.1|CA815003
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGAC-TATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|294966029|gb|GW837396.1|GW837396
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|351027154|gb|FQ440016.1|FQ440016
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|110730595|gb|EE107855.1|EE107855
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|110684920|gb|EE062747.1|EE062747
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|110685279|gb|EE063522.1|EE063522
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|87585474|gb|DY474177.1|DY474177
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|161708899|gb|FC059645.1|FC059645
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATACTGCTTGTTTCAAGGACATATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|110372611|gb|EC936793.1|EC936793
EST:     CCGGCGCCATCTCTTACTCCGTTGATAAAGCAGAATCCTCTTCTTCCAAG                         ATGGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: CCGGCGCCATCTCTTACTCCGTTGAT-AAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|34549368|gb|CF517600.1|CF517600
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|110688943|gb|EE068071.1|EE068071
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|110718953|gb|EE096378.1|EE096378
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|161711825|gb|FC058745.1|FC058745
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|33407951|gb|CF213578.1|CF213578
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttcacttggcatatcggttgctgattgtgatctatctcctctttttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGAGAATGTTGCTCTTCTTAAGCAACAGTATGGGTTAAACAAAACAGCAAAT
                    tgctgat  putative branch site (score: 3)
                                tctatctcctcttttt  putative PPT
                                         tcttttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tttcttgttgctttcttcccaacttaccacttgactttatccctcttttcacttggcatatcggttgctgattgtgatctatctcctctttttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGAGAATGTTGCTCTTCTTAAGCAACAGTATGGGTTAAACAAAACAGCAAAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - -tgttgct
- - - - - - -tcttccc
- - - - - - - - - - - - - ccacttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctcctc