1 5' 3' | 2 5' 3' | 3 5' 3' |
...tttttaataaatttcatgattgcctaacaaaaaaataaaaaataaaaaatgattgccactggattagtcatttatttcttttaatcttggtttcatgcagGTGACGTCTCCCGCAGGCAACACGGTGCACACTCTAAAGGGAACATCTGGGGACAAGTTTGAATTTAAGGCCCCACGAAGTGGAATGTACAAATTTTGTT
species | Vitis vinifera |
transcript | Vv05s0020g04150.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGATCACGACATTTTCTGGGGCTCTGATCACCCTGGCATCGATTTCACT GTGACGTCTCCCGCAGGCAACACGGTGCACACTCTAAAGGGAACATCTGGGEST: gi|32244957|gb|CD710776.1|CD710776
genomic: TCGATCACGACATTTTCTGGGGCTCTGATCACCCTGGCATCGATTTCACTgtatgtccct ... tttcatgcagGTGACGTCTCCCGCAGGCAACACGGTGCACACTCTAAAGGGAACATCTGGG
EST: TCGATCACGACATTTTCTGGGGCTCTGATCACCCTGGCATCGATTTCACT GTGACGTCTCCCGCAGGCAACACGGTGCACACTTTAAAGGGAACATCTGGGEST: gi|30304834|gb|CB981628.1|CB981628
genomic: TCGATCACGACATTTTCTGGGGCTCTGATCACCCTGGCATCGATTTCACTgtatgtccct ... tttcatgcagGTGACGTCTCCCGCAGGCAACACGGTGCACACTCTAAAGGGAACATCTGGG
EST: TCGATCACGACATTTTCTGGGGCTCTGATCACCCTGGCATCGATTTCACT GTGACGTCTCCCGCAGGCAACACGGTGCACACTCTAAAGGGAACATCTGGGEST: gi|351041440|gb|FQ447567.1|FQ447567
genomic: TCGATCACGACATTTTCTGGGGCTCTGATCACCCTGGCATCGATTTCACTgtatgtccct ... tttcatgcagGTGACGTCTCCCGCAGGCAACACGGTGCACACTCTAAAGGGAACATCTGGG
EST: TCGATCACGACATTTTCTGGGGCTCTGATCACCCTGGCATCGATTTCACT GTGACGTCTCCCGCAGGCAACACGGTGCACACTCTAAAGGGAACATCTGGGEST: gi|22009989|gb|BQ795023.1|BQ795023
genomic: TCGATCACGACATTTTCTGGGGCTCTGATCACCCTGGCATCGATTTCACTgtatgtccct ... tttcatgcagGTGACGTCTCCCGCAGGCAACACGGTGCACACTCTAAAGGGAACATCTGGG
EST: TCGATCACGACATTATCTGGGGTTCTGATCACCCTGGCATCGATTTCACT GTGACGTCTCCCGCAGGCAACACGGTGCACACTCTAAAGGGAACATCTGGGEST: gi|18458532|gb|BM436810.1|BM436810
genomic: TCGATCACGACATTTTCTGGGGCTCTGATCACCCTGGCATCGATTTCACTgtatgtccct ... tttcatgcagGTGACGTCTCCCGCAGGCAACACGGTGCACACTCTAAAGGGAACATCTGGG
EST: TCGATCACGACATTTTCTGGGGCTCTGATCACCCTGGCATCGATTTCACT GTGACGTCTCCCGCAGGCAACACGGTGCACACTCTAAAGGGAACATCTGGGEST: gi|110391808|gb|EC956810.1|EC956810
genomic: TCGATCACGACATTTTCTGGGGCTCTGATCACCCTGGCATCGATTTCACTgtatgtccct ... tttcatgcagGTGACGTCTCCCGCAGGCAACACGGTGCACACTCTAAAGGGAACATCTGGG
EST: TCGATCACGACATTTTCTGGGGCTCTGATCACCCTGGCATCGATTTCACT GTGACGTCTCCCGCAGGCAACACGGTGCACACTCTAAAGGGAACATCTGGGEST: gi|110689594|gb|EE065965.1|EE065965
genomic: TCGATCACGACATTTTCTGGGGCTCTGATCACCCTGGCATCGATTTCACTgtatgtccct ... tttcatgcagGTGACGTCTCCCGCAGGCAACACGGTGCACACTCTAAAGGGAACATCTGGG
EST: TCGATCACGACATTTTCTGGGGCTCTGATCACCCTGGCATCGATTTCACT GTGACGTCTCCCGCAGGCAACACGGTGCACACTCTAAAGGGAACATCTGGGEST: gi|351045647|gb|FQ440832.1|FQ440832
genomic: TCGATCACGACATTTTCTGGGGCTCTGATCACCCTGGCATCGATTTCACTgtatgtccct ... tttcatgcagGTGACGTCTCCCGCAGGCAACACGGTGCACACTCTAAAGGGAACATCTGGG
EST: TCGATCACGACATTTTCTGGGGCTCTGATCACCCTGGCATCGATTTCACT GTGACGTCTCCCGCAGGCAACACGGTGCACACTCTAAAGGGAACATCTGGGEST: gi|110715167|gb|EE092904.1|EE092904
genomic: TCGATCACGACATTTTCTGGGGCTCTGATCACCCTGGCATCGATTTCACTgtatgtccct ... tttcatgcagGTGACGTCTCCCGCAGGCAACACGGTGCACACTCTAAAGGGAACATCTGGG
EST: TCGATCACGACATTTTCTGGGGTTCTGATCACCCTGGCATCGATTTCACT GTGACGTCTCCCGCAGGCAACACGGTGCACACTCTAAAGGGAACATCTGGGEST: gi|71879666|gb|DT028721.1|DT028721
genomic: TCGATCACGACATTTTCTGGGGCTCTGATCACCCTGGCATCGATTTCACTgtatgtccct ... tttcatgcagGTGACGTCTCCCGCAGGCAACACGGTGCACACTCTAAAGGGAACATCTGGG
EST: TCGATCACGACATTTTCTGGGGCTCTGATCACCCTGGCATCGATTTCACT GTGACGTCTCCCGCAGGCAACACGGTGCACACTCTAAAGGGAACATCTGGGEST: gi|87585357|gb|DY474109.1|DY474109
genomic: TCGATCACGACATTTTCTGGGGCTCTGATCACCCTGGCATCGATTTCACTgtatgtccct ... tttcatgcagGTGACGTCTCCCGCAGGCAACACGGTGCACACTCTAAAGGGAACATCTGGG
EST: TCGATCACGACATTTTCTGGGGCTCTGATCACCCTGGCATCGATTTCACT GTGACGTCTCCCGCAGGCAACACGGTGCACACTCTAAAGGGAACATCTGGGEST: gi|110707896|gb|EE084817.1|EE084817
genomic: TCGATCACGACATTTTCTGGGGCTCTGATCACCCTGGCATCGATTTCACTgtatgtccct ... tttcatgcagGTGACGTCTCCCGCAGGCAACACGGTGCACACTCTAAAGGGAACATCTGGG
EST: TCGATCACGACATTTTCTGGGGCTCTGATCACCCTGGCATCGATTTCACT GTGACGTCTCCCGCAGGCAACACGGTGCACACTCTAAAGGGAACATCTGGGEST: gi|110386948|gb|EC951583.1|EC951583
genomic: TCGATCACGACATTTTCTGGGGCTCTGATCACCCTGGCATCGATTTCACTgtatgtccct ... tttcatgcagGTGACGTCTCCCGCAGGCAACACGGTGCACACTCTAAAGGGAACATCTGGG
EST: TCGATCACGACATTTTCTGGGGCTCTGATCACCCTGGCATCGATTTCACT GTGACGTCTCCCGCAGGCAACACGGTGCACACTCTAAAGGGAACATCTGGGEST: gi|51051053|gb|CO818862.1|CO818862
genomic: TCGATCACGACATTTTCTGGGGCTCTGATCACCCTGGCATCGATTTCACTgtatgtccct ... tttcatgcagGTGACGTCTCCCGCAGGCAACACGGTGCACACTCTAAAGGGAACATCTGGG
EST: TCGATCACGACATTTTCTGGGGCTCTGATCACCCTGGCATCGATTTCACT GTGACGTCTCCCGCAGGCAACACGGTGCACACTCTAAAGGGAACATCTGGGEST: gi|71878189|gb|DT027244.1|DT027244
genomic: TCGATCACGACATTTTCTGGGGCTCTGATCACCCTGGCATCGATTTCACTgtatgtccct ... tttcatgcagGTGACGTCTCCCGCAGGCAACACGGTGCACACTCTAAAGGGAACATCTGGG
EST: TCGATCACGACATTTTCTGGGGCTCTGATCACCCTGGCATCGATTTCACT GTGACGTCTCCCGCAGGCAACACGGTGCACACTCTAAAGGGAACATCTGGGEST: gi|32245175|gb|CD710994.1|CD710994
genomic: TCGATCACGACATTTTCTGGGGCTCTGATCACCCTGGCATCGATTTCACTgtatgtccct ... tttcatgcagGTGACGTCTCCCGCAGGCAACACGGTGCACACTCTAAAGGGAACATCTGGG
EST: TCGATCACGACATTTTCTGGGGCTCTGATCACCCTGGCATCGATTTCACT GTGACGTCTCCCGCAGGCAACACGGTGCACACTCTAAAGGGAACATCTGGGEST: gi|27582549|gb|CB005244.1|CB005244
genomic: TCGATCACGACATTTTCTGGGGCTCTGATCACCCTGGCATCGATTTCACTgtatgtccct ... tttcatgcagGTGACGTCTCCCGCAGGCAACACGGTGCACACTCTAAAGGGAACATCTGGG
EST: TCGATCACGACATTTTCTGGGGCTCTGATCACCCTGGCATCGATTTCACT GTGACGTCTCCCGCAGGCAACACGGTGCACACTCTAAAGGGAACATCTGGGEST: gi|110373933|gb|EC938946.1|EC938946
genomic: TCGATCACGACATTTTCTGGGGCTCTGATCACCCTGGCATCGATTTCACTgtatgtccct ... tttcatgcagGTGACGTCTCCCGCAGGCAACACGGTGCACACTCTAAAGGGAACATCTGGG
EST: TCGATCACGACATTTTCTGGGGCTCTGATCACCCTGGCATCGATTTCACT GTGACGTCTCCCGCAGGCAACACGGTGCACACTCTAAAGGGAACATCTGGGEST: gi|110367618|gb|EC931562.1|EC931562
genomic: TCGATCACGACATTTTCTGGGGCTCTGATCACCCTGGCATCGATTTCACTgtatgtccct ... tttcatgcagGTGACGTCTCCCGCAGGCAACACGGTGCACACTCTAAAGGGAACATCTGGG
EST: TCGATCACGACATTTTCTGGGGCTCTGATCACCCTGGCATCGATTTCACT GTGACGTCTCCCGCAGGCAACACGGTGCACACTCTAAAGGGAACATCTGGGEST: gi|46917814|gb|CN547143.1|CN547143
genomic: TCGATCACGACATTTTCTGGGGCTCTGATCACCCTGGCATCGATTTCACTgtatgtccct ... tttcatgcagGTGACGTCTCCCGCAGGCAACACGGTGCACACTCTAAAGGGAACATCTGGG
EST: TCGATCACGACATTTTCTGGGGTTCTGATCACCCTGGCATCGATTTCACT GTGACGTCTCCCGCAGGCAACACGGTGCACACTCTAAAGGGAACATCTGGGEST: gi|71877713|gb|DT026768.1|DT026768
genomic: TCGATCACGACATTTTCTGGGGCTCTGATCACCCTGGCATCGATTTCACTgtatgtccct ... tttcatgcagGTGACGTCTCCCGCAGGCAACACGGTGCACACTCTAAAGGGAACATCTGGG
EST: TCGATCACGACATTTTCTGGGGCTCTGATCACCCTGGCATCGATTTCACT GTGACGTCTCCCGCAGGCAACACGGTGCACACTCTAAAGGGAACATCTGGGEST: gi|71878721|gb|DT027776.1|DT027776
genomic: TCGATCACGACATTTTCTGGGGCTCTGATCACCCTGGCATCGATTTCACTgtatgtccct ... tttcatgcagGTGACGTCTCCCGCAGGCAACACGGTGCACACTCTAAAGGGAACATCTGGG
EST: TCGATCACGACATTTTCTGGGGCTCTGATCACCCTGGCATCGATTTCACT GTGACGTCTCCCGCAGGCAACACGGTGCACACTCTAAAGGGAACATCTGGGEST: gi|110427983|gb|EC994440.1|EC994440
genomic: TCGATCACGACATTTTCTGGGGCTCTGATCACCCTGGCATCGATTTCACTgtatgtccct ... tttcatgcagGTGACGTCTCCCGCAGGCAACACGGTGCACACTCTAAAGGGAACATCTGGG
EST: TCGATCACGACATTTTCTGGGGCTCTGATCACCCTGGCATCGATTTCACT GTGACGTCTCCCGCAGGCAACACGGTGCACACTCTAAAGGAAACATCTGGGEST: gi|110701935|gb|EE080075.1|EE080075
genomic: TCGATCACGACATTTTCTGGGGCTCTGATCACCCTGGCATCGATTTCACTgtatgtccct ... tttcatgcagGTGACGTCTCCCGCAGGCAACACGGTGCACACTCTAAAGGGAACATCTGGG
EST: TCGATCACGACATTTTCTGGGGCTCTGATCACCCTGGCATCGATTTCACT GTGACGTCTCCCGCAGGCAACACGGTGCACACTCTAAAGGGAACATCTGGG
genomic: TCGATCACGACATTTTCTGGGGCTCTGATCACCCTGGCATCGATTTCACTgtatgtccct ... tttcatgcagGTGACGTCTCCCGCAGGCAACACGGTGCACACTCTAAAGGGAACATCTGGG
aaaatgattgccactggattagtcatttatttcttttaatcttggtttcatgcagGTGACGTCTCCCGCAGGCAACACGGTGCACACTCTAAAGGGAACATCTGGGGACAAGTTTGAATTTAAGGCCCCACGAAGTGGAATGTACAAATTTTGTT
ttttaat putative branch site (score: 3)
attagtcatttatttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttaataaatttcatgattgcctaacaaaaaaataaaaaataaaaaatgattgccactggattagtcatttatttcttttaatcttggtttcatgcagGTGACGTCTCCCGCAGGCAACACGGTGCACACTCTAAAGGGAACATCTGGGGACAAGTTTGAATTTAAGGCCCCACGAAGTGGAATGTACAAATTTTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - -aataaat
- - - - - - - - -gattgcc
- - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - -aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - -tgccact