1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ctgggtttgctgctttcatcaaatatctgtttgcaatttttgtgaaaaaatgaaaagattcattttcattctaataatttgctctttttttcttctgtagGTTTCTAGATTGGGCTTTGGATGTGCAGGACTTTCTGGGATCTATAATTCACCCCTCTCCCATGAAGCTGGATGTTCAGTTATAAAGGAAGCTTTTTATA
species | Vitis vinifera |
transcript | Vv05s0020g04130.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGCCTCAGATCAAAATCCCAAGAGTCAAATTGGGCAGTCAGGGATTGGAG GTTTCTAGATTGGGCTTTGGATGTGCAGGACTTTCTGGGATCTATAATTCAEST: gi|33407206|gb|CF212833.1|CF212833
genomic: TGCCTCAGATCAAAATCCCAAGAGTCAAATTGGGCAGTCAGGGATTGGAGgtgagtttgt ... tcttctgtagGTTTCTAGATTGGGCTTTGGATGTGCAGGACTTTCTGGGATCTATAATTCA
EST: TGCCTCAGATCAAAATCCCAAGAGTCAAATTGGGCAGTCAGGGATTGGAG GTTTCTAGATTGGGCTTTGGATGTGCAGGACTTTCTGGGATCTATAATTCAEST: gi|33406944|gb|CF212571.1|CF212571
genomic: TGCCTCAGATCAAAATCCCAAGAGTCAAATTGGGCAGTCAGGGATTGGAGgtgagtttgt ... tcttctgtagGTTTCTAGATTGGGCTTTGGATGTGCAGGACTTTCTGGGATCTATAATTCA
EST: TGCCTCAGATCAAAATCCCAAGAGTCAAATTGGGCAGTCAGGGATTGGAG GTTTCTAGATTGGGCTTTGGATGTGCAGGACTTTCTGGGATCTATAATTCA
genomic: TGCCTCAGATCAAAATCCCAAGAGTCAAATTGGGCAGTCAGGGATTGGAGgtgagtttgt ... tcttctgtagGTTTCTAGATTGGGCTTTGGATGTGCAGGACTTTCTGGGATCTATAATTCA
aaaaatgaaaagattcattttcattctaataatttgctctttttttcttctgtagGTTTCTAGATTGGGCTTTGGATGTGCAGGACTTTCTGGGATCTATAATTCACCCCTCTCCCATGAAGCTGGATGTTCAGTTATAAAGGAAGCTTTTTATA
ttctaat putative branch site (score: 2)
tttgctctttttttct putative PPT
aaaagattcattttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgggtttgctgctttcatcaaatatctgtttgcaatttttgtgaaaaaatgaaaagattcattttcattctaataatttgctctttttttcttctgtagGTTTCTAGATTGGGCTTTGGATGTGCAGGACTTTCTGGGATCTATAATTCACCCCTCTCCCATGAAGCTGGATGTTCAGTTATAAAGGAAGCTTTTTATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- gggtttg
- - - - - tgctttc
- - - - - - - - -atcaaat
- - - - - - - - - - - - - -tgtttgc
- - - - - - - - - - - - - - - - - - - - - - aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaga