Sequence
atgc intronic sequence ATGC exonic sequencegtaaaatttccttaagttcgcattacctttctgggtgttcctttggtataattaattatgttgctaattttaaaattcgctacttgtttgcagCAACTGGTGCGCCTGTTCCCGCTCCAGGCCCTGCAGCACTTGGACCAACACTCTCTCCTCAAGCCACTCCCTCTCCTACAGGACCTAGTCCTAAAG
Basic information
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|22015254|gb|BQ800288.1|BQ800288EST: CTCCCTCCCGCGTGCTTGTAACATGGCTAGTGTGCCGGTCCAATGCAAAG CAACTGGTGCGCCTGTTCCCGCTCCAGGCCCTGCAGCACTTGGACCAACAC
genomic: CTCCCTCCCGCGTGCTTGTAACACGGCTAGTGTGCCGGTCCAATGCAAAGgtaaaatttc ... ttgtttgcagCAACTGGTGCGCCTGTTCCCGCTCCAGGCCCTGCAGCACTTGGACCAACAC
EST:
gi|110386596|gb|EC951203.1|EC951203EST: CTCCCTCCCGCGTGCTTGTAACATGGCTAGTGTGCCGGTCCAATGCAAAG CAACTGGTGCGCCTGTTCCCGCTCCAGGCCCTGCAGCACTTGGACCAACAC
genomic: CTCCCTCCCGCGTGCTTGTAACACGGCTAGTGTGCCGGTCCAATGCAAAGgtaaaatttc ... ttgtttgcagCAACTGGTGCGCCTGTTCCCGCTCCAGGCCCTGCAGCACTTGGACCAACAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcctttggtataattaattatgttgctaattttaaaattcgctacttgtttgcagCAACTGGTGCGCCTGTTCCCGCTCCAGGCCCTGCAGCACTTGGACCAACACTCTCTCCTCAAGCCACTCCCTCTCCTACAGGACCTAGTCCTAAAG
tgctaat putative branch site (score: 2)
cttgttt putative PPT
tggtataattaattat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaaatttccttaagttcgcattacctttctgggtgttcctttggtataattaattatgttgctaattttaaaattcgctacttgtttgcagCAACTGGTGCGCCTGTTCCCGCTCCAGGCCCTGCAGCACTTGGACCAACACTCTCTCCTCAAGCCACTCCCTCTCCTACAGGACCTAGTCCTAAAG
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