Sequence
atgc intronic sequence ATGC exonic sequence...tacagaattaagattgtccaccgtgatctgtttgttttctgtacaaataagtatatagttctctgttatgaatccccactaagtactatttgttactcagGAAAAATAGCTGTTATTGGCGGCTGTCGTGAATATACAGGTGCCCCATACTTCTCTGCTATCTCAGCTTTAAAAATT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g02800.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA07G38750.1 (Glycine max), 3'ss of exon 2
tacagaattaagattgtccaccgtgatctgtttgttttctgtacaaataagtatatagttctctgttatgaatccccactaagtactatttgttactcagGAAAAATAGCTGTTATTGGCGGCTGTCGTGAATATACAGGTGCCCCATACTTCTCTGCTATCTCAGCTTTAAAAATT
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-------------gtataacatatgatcctttcttttatttttgggctcaagataaagaagaaacgtctaatgtttccttcacttatgttt-taaatcagGAAATATAGCTGTTATTGGAGGTTGCCGTGAATACACAGGTGCTCCATATTTTTCTGCAATTTCGGCCTTAAAAATT
upper sequence: Vv05s0020g02800.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA17G01960.1 (Glycine max), 3'ss of exon 2
-tacagaattaagattgtccaccgtgatctgtttgttttctgtacaaataagtatatagttctctgttatgaatccccactaagtactatttgttactcagGAAAAATAGCTGTTATTGGCGGCTGTCGTGAATATACAGGTGCCCCATACTTCTCTGCTATCTCAGCTTTAAAAATT
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gtataacataattgcaactctctatgatccttttatttaagaaaagaagaaacctctaatgtttcctt---------cactta----tgttt-caaatcagGAAATATAGCTGTTATTGGAGGTTGCCGTGAATACACAGGTGCTCCATATTTTGCTGCAATTTCAGCCTTAAAAATT
upper sequence: Vv05s0020g02800.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT5G19150.1 (Arabidopsis thaliana), 3'ss of exon 1
----------------------tacagaattaaga--ttgtccaccgtgatctgtttgttttct---gtacaaataagtata---tagttctctgttatgaatccccactaagtactatttgttactcagGAAAAATAGCTGTTATTGGCGGCTGTCGTGAATATACAGGTGCCCCATACTTCTCTGCTATCTCAGCTTTAAAAATT
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gttagtgcttgctctattcaattgtgtcatcagaaatttatcaaattcgaaactttaggattttaaagtttgagttttttcaggttactttgatgttttagctcatgtgttggaattgatcttgtgtcagGGAAGATAGCTGTGATTGGAGGATGTCGTGAATACACAGGAGCTCCATACTTCGCTGCCATTTCAGCTTTGAAAATCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32247754|gb|CD713573.1|CD713573EST: GAGAGCAATCACTCCCACACTTGACTTGGCTAGGCACAAAGGCCAGGCTG GAAAAATAGCTGTTATTGGCGGCTGTCGTGAATATACAGGTGCCCCATACT
genomic: GAGAGCAATCACTCCCACACTTGACTTGGCTAGGCACAAAGGCCAGGCTGgtaagctcat ... tgttactcagGAAAAATAGCTGTTATTGGCGGCTGTCGTGAATATACAGGTGCCCCATACT
EST:
gi|32247907|gb|CD713726.1|CD713726EST: GAGAGCAATCACTCCCACACTTGACTTGGCTAGGCACAAAGGCCAGGCTG GAAAAATAGCTGTTATTGGCGGCTGTCGTGAATATACAGGTGCCCCATACT
genomic: GAGAGCAATCACTCCCACACTTGACTTGGCTAGGCACAAAGGCCAGGCTGgtaagctcat ... tgttactcagGAAAAATAGCTGTTATTGGCGGCTGTCGTGAATATACAGGTGCCCCATACT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aataagtatatagttctctgttatgaatccccactaagtactatttgttactcagGAAAAATAGCTGTTATTGGCGGCTGTCGTGAATATACAGGTGCCCCATACTTCTCTGCTATCTCAGCTTTAAAAATT
tatatagtt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tacagaattaagattgtccaccgtgatctgtttgttttctgtacaaataagtatatagttctctgttatgaatccccactaagtactatttgttactcagGAAAAATAGCTGTTATTGGCGGCTGTCGTGAATATACAGGTGCCCCATACTTCTCTGCTATCTCAGCTTTAAAAATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- -agaattaa
- - - - - - - - tccaccg
- - - - - - - - - - - - - -ctgtttg
- - - - - - - - - - - - - - - - - - - - - -caaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccactaa