Sequence
atgc intronic sequence ATGC exonic sequence...actttcctctctgttatcttgccggccatttcaattgccatcatttctgtgtgttgttcataaaatgtcttgctttaaacggtccttcctggcgacacagGCATCTGTGGAGGTAGATTTCTTCACTGAATACGGCGAGGGAAGCAGGTACAGGATAGAGGAAGTAATTGGTAAAGGAAGCTATGGTGTCGTTTGTTCTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g02530.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G084483_T01 (Zea mays), 3'ss of exon 1
actttcctctctgttatcttgccggccatttcaattgccatcatttctgtgtgttgttcataaaatgtcttgctt-taaacggtccttcctggcgacacagGCATCTGTGGAGGTAGATTTCTTCACTGAATACGGCGAGGGAAGCAGGTACAGGATAGAGGAAGTAATTGGTAAAGGAAGCTATGGTGTCGTTTGTTCTG
| | | ||| | || | ||| | | | || |||| | || | | | || || | || || |||||| |||||| || || | ||||| ||||| || ||||||||||| |||||||||| |||||| || || || || ||||| || || ||||| ||||| ||||
-ccaactcgccagttgccaagcttgtcatagtacaagacctctattcttagcgtcgcatttgtccagactgactcatttggtgttttttgtggcgatgcagGCACCTTCAGAAATGGATTTTTTCACAGAGTACGGCGAGGGGAGCAGGTACAAGATAGAAGAGGTCATAGGGAAAGGCAGTTACGGTGTGGTTTGCTCTG
upper sequence: Vv05s0020g02530.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA15G10940.4 (Glycine max), 3'ss of exon 1
actttcctctctgttatcttgccggccatttcaattgccatcatttctgtgtgtt-gttcataaaatgtcttgctttaaac-ggtccttcctggcgacacagGCATCTGTGGAGGTAGATTTCTTCACTGAATACGGCGAGGGAAGCAGGTACAGGATAGAGGAAGTAATTGGTAAAGGAAGCTATGGTGTCGTTTGTTCTG
|| | || || |||| | ||||| || || || || ||| | | | | | || ||| ||| | || ||| ||||||| ||||| || ||||| ||||||||||| || || ||||| ||||| ||||||||||||||||||||||||||||||||||| || || ||||
-attaaaaatatgg-atgttgcagatcattttaaccatacgtatggctttgagtttgcttagtatcttcattagaataatttggtttgttgtgtttttgcagTCATCTGTAGAGGTGGACTTCTTTACTGAATACGGTGAAGGGAGCAGATACAGAATAGAGGAAGTAATTGGTAAAGGAAGCTATGGTGTTGTCTGCTCTG
upper sequence: Vv05s0020g02530.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA13G28120.2 (Glycine max), 3'ss of exon 1
actttcctctctgttatcttgccggccatttcaattgccatcatttctgtgtgtt-gttcataaaatgtcttgctttaaac-ggtccttcctggcgacacagGCATCTGTGGAGGTAGATTTCTTCACTGAATACGGCGAGGGAAGCAGGTACAGGATAGAGGAAGTAATTGGTAAAGGAAGCTATGGTGTCGTTTGTTCTG
| || | || || |||| | ||||| || || || || ||| | | | | | || ||| ||| | || ||| ||||||| ||||| || ||||| ||||||||||| || || ||||| ||||| ||||||||||||||||||||||||||||||||||| || || ||||
-cattaaaatatgg-atgttgcagatcatttaaaccatacgtatggctttgagtttgcttagtatcttcattagaataatttggtttgttgtgtttttgcagTCATCTGTAGAGGTGGACTTCTTTACTGAATACGGTGAAGGGAGCAGATACAGAATAGAGGAAGTAATTGGTAAAGGAAGCTATGGTGTTGTCTGCTCTG
upper sequence: Vv05s0020g02530.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA17G02220.1 (Glycine max), 3'ss of exon 1
actttcctctctgttatcttgc-cggccatttcaattgccatcatttctgtgtgttg-ttcataaaatgtcttgctttaaacggtccttcctggcgacacagGCATCTGTGGAGGTAGATTTCTTCACTGAATACGGCGAGGGAAGCAGGTACAGGATAGAGGAAGTAATTGGTAAAGGAAGCTATGGTGTCGTTTGTTCTG
|| | | || || || || | | | | || | | | || | | || | | | | | || | || ||||||| || |||| ||||| || |||||||| || || || || |||| |||||||||||||| |||||||||||||||||||| ||||| ||||
--ttgtgtatatggagcctcatatatgtgttgcagctcatttaaatcatgattttggctttgcttggtatattacaaaatataatttgttatgtttatgtagTCATCTGTAGATATAGACTTCTTTACAGAATACGGTGAAGGGAGTAGATACAAAATAGAGGAAGTAATAGGTAAAGGAAGCTATGGTGTTGTTTGCTCTG
upper sequence: Vv05s0020g02530.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT5G19010.1 (Arabidopsis thaliana), 3'ss of exon 1
------------------------------------------------------------actttcctctctgttatc-ttgccggccatttcaattgccatcatttctgtgtgttgttcataaaatgtcttgctttaaacggtccttcctggcgacacagGCATCTGTGGAGGTAGATTTCTTCACTGAATACGGCGAGGGAAGCAGGTACAGGATAGAGGAAGTAATTGGTAAAGGAAGCTATGGTGTCGTTTGTTCTG
| |||| | | | | |||| | || | | ||| ||||| ||| ||| | | | | | || | || ||| | ||| |||| || ||||||||||||||||| ||||| || || |||||||| ||||| ||||||||||| |||||||||||||| ||||| || || |||||||
gtccaatttttcaatctcttatgtatcagatttgcttattagaactgattaggatctgtagcaatcctttttactgttactgccttttagtttagtcctaatc-tttctctgtattga----agcttttgatattgacaatagatttttctgtatattcagTCATCAGTTGAGGTAGATTTCTTCACGGAATATGGTGAAGGAAGCAGATACAGAATAGAGGAAGTGATTGGTAAAGGAAGTTATGGAGTTGTCTGTTCTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tctgtgtgttgttcataaaatgtcttgctttaaacggtccttcctggcgacacagGCATCTGTGGAGGTAGATTTCTTCACTGAATACGGCGAGGGAAGCAGGTACAGGATAGAGGAAGTAATTGGTAAAGGAAGCTATGGTGTCGTTTGTTCTG
tccttcctg CT-rich tract
ttcataaaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
actttcctctctgttatcttgccggccatttcaattgccatcatttctgtgtgttgttcataaaatgtcttgctttaaacggtccttcctggcgacacagGCATCTGTGGAGGTAGATTTCTTCACTGAATACGGCGAGGGAAGCAGGTACAGGATAGAGGAAGTAATTGGTAAAGGAAGCTATGGTGTCGTTTGTTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - tcctctc
- - - - - - - - - - -ccggcca
- - - - - - - - - - - - - - - - - - gccatca
- - - - - - - - - - - - - - - - - - - - - - - -tgtgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttgctt