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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tacatgaaggaagattattcatacatgattcatcctttgactggtttcttaagctaattatgttaattgaattccactcacaaaccccaaatctttgcagTGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTTTCCTCGGACTTTTCACTGTGTCCATGAGTCTCACCGTTGGAGTGAGCTG

Basic information

species Vitis vinifera
transcript Vv05s0020g02430.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|294964072|gb|GW837875.1|GW837875
EST:     CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCT                         TGTTGTGGCCTCTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
genomic: CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCTgtaagtcgct ... atctttgcagTGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
EST: gi|30256389|gb|CB972232.1|CB972232
EST:     CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCT                         TGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
genomic: CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCTgtaagtcgct ... atctttgcagTGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
EST: gi|77585674|gb|DV221925.1|DV221925
EST:     CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCT                         TGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
genomic: CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCTgtaagtcgct ... atctttgcagTGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
EST: gi|30134992|gb|CB920330.1|CB920330
EST:     CTTATCTTCTTGCCCTTCATCT                         TGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
genomic: CTTATCTTCTTGCCCTTCATCTgtaagtcgct ... atctttgcagTGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
EST: gi|161705564|gb|FC055763.1|FC055763
EST:     CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCT                         TGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
genomic: CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCTgtaagtcgct ... atctttgcagTGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
EST: gi|110424468|gb|EC990830.1|EC990830
EST:     CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCT                         TGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
genomic: CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCTgtaagtcgct ... atctttgcagTGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
EST: gi|110366357|gb|EC930223.1|EC930223
EST:     CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCT                         TGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCAT
genomic: CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCTgtaagtcgct ... atctttgcagTGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCAT
EST: gi|30135508|gb|CB920846.1|CB920846
EST:     CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCT                         TGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
genomic: CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCTgtaagtcgct ... atctttgcagTGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
EST: gi|22015584|gb|BQ800618.1|BQ800618
EST:     CGGCCTTCTCTTG-TCCTTATCTTCTTGCCCTTCATCT                         TGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
genomic: CGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCTgtaagtcgct ... atctttgcagTGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
EST: gi|161718598|gb|FC068199.1|FC068199
EST:     CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCT                         TGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
genomic: CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCTgtaagtcgct ... atctttgcagTGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
EST: gi|352763363|gb|FQ471675.1|FQ471675
EST:     CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCT                         TGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
genomic: CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCTgtaagtcgct ... atctttgcagTGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
EST: gi|27585686|gb|CB008381.1|CB008381
EST:     CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCT                         TGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
genomic: CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCTgtaagtcgct ... atctttgcagTGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
EST: gi|110414828|gb|EC980688.1|EC980688
EST:     CAGGGGCAAATCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCT                         TGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
genomic: CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCTgtaagtcgct ... atctttgcagTGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
EST: gi|110396921|gb|EC962628.1|EC962628
EST:     CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCT                         TGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
genomic: CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCTgtaagtcgct ... atctttgcagTGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
EST: gi|110425133|gb|EC991510.1|EC991510
EST:     CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCT                         TGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
genomic: CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCTgtaagtcgct ... atctttgcagTGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
EST: gi|22007558|gb|BQ792592.1|BQ792592
EST:     CA-GGGCAA-TCCCGCCTTCTC-TG-TCCCTATCTTC-TGCCCTTCATCT                         TG-TGTGGCCACTTCATGTGTATCAGCAAAGGCAT-CTCTGAACCTCATTT
genomic: CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCTgtaagtcgct ... atctttgcagTGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
EST: gi|161707346|gb|FC055170.1|FC055170
EST:     CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCT                         TGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
genomic: CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCTgtaagtcgct ... atctttgcagTGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
EST: gi|110406721|gb|EC972303.1|EC972303
EST:     CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCT                         TGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
genomic: CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCTgtaagtcgct ... atctttgcagTGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
EST: gi|30256294|gb|CB972137.1|CB972137
EST:     CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCT                         TGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
genomic: CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCTgtaagtcgct ... atctttgcagTGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
EST: gi|30303660|gb|CB980454.1|CB980454
EST:     CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCT                         TGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
genomic: CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCTgtaagtcgct ... atctttgcagTGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
EST: gi|110405197|gb|EC970733.1|EC970733
EST:     CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCT                         TGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
genomic: CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCTgtaagtcgct ... atctttgcagTGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
EST: gi|30303653|gb|CB980447.1|CB980447
EST:     CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCT                         TGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
genomic: CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCTgtaagtcgct ... atctttgcagTGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
EST: gi|71860785|gb|DT009840.1|DT009840
EST:     CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCT                         TGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
genomic: CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCTgtaagtcgct ... atctttgcagTGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
EST: gi|110411863|gb|EC977590.1|EC977590
EST:     CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCT                         TGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
genomic: CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCTgtaagtcgct ... atctttgcagTGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
EST: gi|110394807|gb|EC960137.1|EC960137
EST:     CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCT                         TGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
genomic: CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCTgtaagtcgct ... atctttgcagTGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
EST: gi|110391737|gb|EC956736.1|EC956736
EST:     CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCT                         TGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
genomic: CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCTgtaagtcgct ... atctttgcagTGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
EST: gi|351031785|gb|FQ460042.1|FQ460042
EST:     CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCT                         TGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
genomic: CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCTgtaagtcgct ... atctttgcagTGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
EST: gi|110716091|gb|EE090767.1|EE090767
EST:     CAAGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCT                         TGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
genomic: CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCTgtaagtcgct ... atctttgcagTGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
EST: gi|351049012|gb|FQ431556.1|FQ431556
EST:     CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCT                         TGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
genomic: CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCTgtaagtcgct ... atctttgcagTGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
EST: gi|110696160|gb|EE075001.1|EE075001
EST:     CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCT                         TGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
genomic: CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCTgtaagtcgct ... atctttgcagTGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
EST: gi|26262226|gb|CA813289.1|CA813289
EST:     CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCT                         TGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
genomic: CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCTgtaagtcgct ... atctttgcagTGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
EST: gi|352777868|gb|FQ466921.1|FQ466921
EST:     CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCT                         TGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
genomic: CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCTgtaagtcgct ... atctttgcagTGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
EST: gi|30306043|gb|CB982837.1|CB982837
EST:     AGGGGCAAATCCGCCCTTCTCGAT-CTCCTTATCTTCTTGCCCTTCATCT                         TGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
genomic: AGGGGCAATTCCGGCCTTCTC-TTGTTCCTTATCTTCTTGCCCTTCATCTgtaagtcgct ... atctttgcagTGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
EST: gi|110423407|gb|EC989753.1|EC989753
EST:     CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCT                         TGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
genomic: CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCTgtaagtcgct ... atctttgcagTGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
EST: gi|33405892|gb|CF211519.1|CF211519
EST:     CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCT                         TGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
genomic: CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCTgtaagtcgct ... atctttgcagTGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
EST: gi|30127299|gb|CB912638.1|CB912638
EST:     CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCT                         TGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
genomic: CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCTgtaagtcgct ... atctttgcagTGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
EST: gi|110394875|gb|EC960259.1|EC960259
EST:     CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCT                         TGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
genomic: CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCTgtaagtcgct ... atctttgcagTGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
EST: gi|33403781|gb|CF209408.1|CF209408
EST:     CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCT                         TGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
genomic: CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCTgtaagtcgct ... atctttgcagTGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
EST: gi|110697844|gb|EE075277.1|EE075277
EST:     CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCT                         TGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
genomic: CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCTgtaagtcgct ... atctttgcagTGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
EST: gi|352794671|gb|FQ475169.1|FQ475169
EST:     CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCT                         TGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
genomic: CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCTgtaagtcgct ... atctttgcagTGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
EST: gi|27586852|gb|CB009547.1|CB009547
EST:     CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCT                         TGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
genomic: CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCTgtaagtcgct ... atctttgcagTGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
EST: gi|110397726|gb|EC963578.1|EC963578
EST:     CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCT                         TGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
genomic: CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCTgtaagtcgct ... atctttgcagTGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
EST: gi|110375341|gb|EC940320.1|EC940320
EST:     CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCT                         TGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
genomic: CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCTgtaagtcgct ... atctttgcagTGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
EST: gi|30298117|gb|CB974911.1|CB974911
EST:     CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCT                         TGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
genomic: CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCTgtaagtcgct ... atctttgcagTGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
EST: gi|34545791|gb|CF514023.1|CF514023
EST:     CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCT                         TGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
genomic: CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCTgtaagtcgct ... atctttgcagTGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
EST: gi|110368203|gb|EC932172.1|EC932172
EST:     CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCT                         TGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
genomic: CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCTgtaagtcgct ... atctttgcagTGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
EST: gi|87584891|gb|DY473877.1|DY473877
EST:     CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCT                         TGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
genomic: CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCTgtaagtcgct ... atctttgcagTGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
EST: gi|71867216|gb|DT016271.1|DT016271
EST:     CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCT                         TGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
genomic: CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCTgtaagtcgct ... atctttgcagTGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
EST: gi|351049054|gb|FQ431598.1|FQ431598
EST:     CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCT                         TGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT
genomic: CAGGGGCAATTCCGGCCTTCTCTTGTTCCTTATCTTCTTGCCCTTCATCTgtaagtcgct ... atctttgcagTGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttaagctaattatgttaattgaattccactcacaaaccccaaatctttgcagTGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTTTCCTCGGACTTTTCACTGTGTCCATGAGTCTCACCGTTGGAGTGAGCTG
                             cactcac  putative branch site (score: 2)
                                              tctttgc  putative PPT
         taattatgttaattga  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tacatgaaggaagattattcatacatgattcatcctttgactggtttcttaagctaattatgttaattgaattccactcacaaaccccaaatctttgcagTGTTGTGGCCACTTCATGTGTATCAGCAAAGGCATCCTCTGAACCTCATTTTCCTCGGACTTTTCACTGTGTCCATGAGTCTCACCGTTGGAGTGAGCTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG
- - - -aggaaga
- - - - - - - - - -catacat
- - - - - - - - - - - - - - -tcatcct
- - - - - - - - - - - - - - - - - - -tgactgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aattgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -accccaa