Sequence
atgc intronic sequence ATGC exonic sequence...aagttgatgaataacgctgtcaggatatgtttaatatgactttttatccttttatatatcattatttttgtggtaattgtttttttggtccaaattgtagGATGGAAATGCTGTGGGTGGCACTGAAATTAGCAAGCGTGAAAAGGCCAGGCTTAAAGAAATGCAGAAGATGAAGAAACAGAAGATCCAGGAAATATTGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g01780.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AC235535.1_FGT001 (Zea mays), 3'ss of exon 1
aagttgatgaataacgctgtcaggata-tgt-ttaatatgactttttatccttttatatatcattatttttgtggtaattgtttttttggtccaaattgtagGATGGAAATGCTGTGGG-TGGCACTGAAATTAGCAAGCGTGAAAAGGCCAGGCTTAAAGAAATGCAGAAGATGAAGAAACAGAAGATCCAGGAAATATTGG---------------
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----------------ttctgagtttaatgtgttgaggggaccctttgttgtgtcatgccctac-acttaagtagtgaaagttttacatttctttgccctaac-catgtctgccgcagACTGATGCAGTGGTTGGGAAGCGAGAGAAAGCAAGGCTAAAAGAACTCCAGAAGATGAAGAAACATAAAATCCAAGAAATATTAGATACTCAAAATGCCG
upper sequence: Vv05s0020g01780.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA15G10370.1 (Glycine max), 3'ss of exon 1
-aagt-tgatgaataacgctgtcaggatatgtttaatatgactttttatccttttatatatcattatttttgtggtaattgtttttttggtccaaattgtagGATGGAAATGCTGTGGGTGGCACTGAAATTAGCAAGCGTGAAAAGGCCAGGCTTAAAGAAATGCAGAAGATGAAGAAACAGAAGATCCAGGAAATATTGG---
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agagtgtgagaagcaacgtgctcgcgaattaacttgtttt-tgtttggctcgcgaatttaaggggaaacctaaagcctaagcgtttgttgtttga-ctatagGATGGGGATAATGT---TGATCCCGAAATTAGCAAGCGAGAGAAGGCGAGATTAAAAGAAATGCAGAAAATGAAGAAACAGAAGATTCAGGAGATACTGGATG
upper sequence: Vv05s0020g01780.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA13G28720.1 (Glycine max), 3'ss of exon 1
-aagttgatgaataacgctgtcaggatatgtttaatatgactttttatccttttatatatcattatttttgtggtaattgtttttttggtccaaattgtagGATGGAAATGCTGTGGGTGGCACTGAAATTAGCAAGCGTGAAAAGGCCAGGCTTAAAGAAATGCAGAAGATGAAGAAACAGAAGATCCAGGAAATATTGG---
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gagagtgagaagcaatgtgctcgcgaattaacttgtttttggttggctcgtgaatttaagggggaaacctaaagcctaagcgtttgttgtttga-ctacagGATGGGGATAATGT---TAATCCCGAAATTAGCAAGCGAGAGAAGACTCGATTAAAAGAAATGCAGAAAATGAAGAAACAGAAGATTCTGGAGATACTGGATG
upper sequence: Vv05s0020g01780.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT5G18620.1 (Arabidopsis thaliana), 3'ss of exon 1
aagttgatgaataacgctgtcaggatatgtttaatatgactttttatcctttt-atatatcattatttttgtggtaattgtttttttggtccaa-----at-tgtagGATGGAAATGCTGTGGGTGGCACTGAAATTAGCAAGCGTGAAAAGGCCAGGCTTAAAGAAATGCAGAAGATGAAGAAACAGAAGATCCAGGAAATATTGG
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-----agtgcttacaatgatgggtggtcgctcattatgatggtacattcatgtgactcgtgaggatatttg--gtcactcttttcataatttgatggttatatgtagGACGAAGAAGACGAGGAGAAAGCTGAGATCAGCAAACGTGAGAAGGCTAGACTCAAAGAAATGCAGAAGATGAAGAAGCAGAAAATTCAGCAAATCTTAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atccttttatatatcattatttttgtggtaattgtttttttggtccaaattgtagGATGGAAATGCTGTGGGTGGCACTGAAATTAGCAAGCGTGAAAAGGCCAGGCTTAAAGAAATGCAGAAGATGAAGAAACAGAAGATCCAGGAAATATTGG
tttatatatcattatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aagttgatgaataacgctgtcaggatatgtttaatatgactttttatccttttatatatcattatttttgtggtaattgtttttttggtccaaattgtagGATGGAAATGCTGTGGGTGGCACTGAAATTAGCAAGCGTGAAAAGGCCAGGCTTAAAGAAATGCAGAAGATGAAGAAACAGAAGATCCAGGAAATATTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - gaataac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgtggt