1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...taattctagtatcatggcctgtatgtattttagtccatgttaaaatattttatttgcctctttttccgctgcgcgttatctgattagcttatgtatgtagACAAATCAAAATCTCGGAGCGGTTCTGATTCTAAGAAGGAACCTGCAGTTCCAAAAGATGGACCAACAGCACATATTGCTGCACAAACATTTACGTTTCG
species | Vitis vinifera |
transcript | Vv05s0020g01770.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TAAGTACGGCTCATCTGCTCAGTCTCATCATGTGACCAGAGTTAGTTCAG ACAAATCAAAATCTCGGAGCGGTTCTGATTCTAAGAAGGAACCTGCAGTTCEST: gi|30302616|gb|CB979410.1|CB979410
genomic: TAAGGACGGCTCATCTGCTCAGTCTCATCATGTGACCAGAGTTAGTTCAGgtgaaccctc ... atgtatgtagACAAATCAAAATCTCGGAGCGGTTCTGATTCTAAGAAGGAACCTGCAGTTC
EST: TAAGGACGGCTCATCTGCTCAGTCTCATCATGTGACCAGAGTTAGTTCAG ACAAATCAAAATCTCGGAGCGGTTCTGATTCTAAGAAGGAACCTGCAGTTC
genomic: TAAGGACGGCTCATCTGCTCAGTCTCATCATGTGACCAGAGTTAGTTCAGgtgaaccctc ... atgtatgtagACAAATCAAAATCTCGGAGCGGTTCTGATTCTAAGAAGGAACCTGCAGTTC
tattttatttgcctctttttccgctgcgcgttatctgattagcttatgtatgtagACAAATCAAAATCTCGGAGCGGTTCTGATTCTAAGAAGGAACCTGCAGTTCCAAAAGATGGACCAACAGCACATATTGCTGCACAAACATTTACGTTTCG
atctgat putative branch site (score: 4)
ttatgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taattctagtatcatggcctgtatgtattttagtccatgttaaaatattttatttgcctctttttccgctgcgcgttatctgattagcttatgtatgtagACAAATCAAAATCTCGGAGCGGTTCTGATTCTAAGAAGGAACCTGCAGTTCCAAAAGATGGACCAACAGCACATATTGCTGCACAAACATTTACGTTTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - -tcatggc
- - - - - - - - - ctgtatg
- - - - - - - - - - - - - - - - - ccatgtt