Sequence
atgc intronic sequence ATGC exonic sequence...aaaacctgtagaaaatatggacaaccatggaataggaatagtaagatttaaaattttgattccatttgtattaattggtgattctttttctttgtttaagAGGGTGCCCCGAGATTTAATTCTGAAAATTTCCTCGAGGAGCGAGATCCCCAATATGATGCCATGCTTAGTCAGATGGTGGGTAGAATCAGATCTAAGTC
Basic information
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110417823|gb|EC983910.1|EC983910EST: CAAAGTCGGTGTCTCGAAGACTCGTGATGATATCGGTTCTGGCTCCTCGG AGGGTGCCCCGAGATTTAATTCTGAAAATTTCCTCGAGGAGCGAGATCCCC
genomic: CAAAGTCGGTGTCTCGAAGACTCGTGATGATATCGGTTCTGGCTCCTCGGgtaagaactt ... tttgtttaagAGGGTGCCCCGAGATTTAATTCTGAAAATTTCCTCGAGGAGCGAGATCCCC
EST:
gi|110407654|gb|EC973263.1|EC973263EST: CAAAGTCGGTGTCTCGAAGACTCGTGATGATATCGGTTCTGGCTCCTCGG AGGGTGCCCCGAGATTTAATTCTGAAAAT
genomic: CAAAGTCGGTGTCTCGAAGACTCGTGATGATATCGGTTCTGGCTCCTCGGgtaagaactt ... tttgtttaagAGGGTGCCCCGAGATTTAATTCTGAAAAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atttaaaattttgattccatttgtattaattggtgattctttttctttgtttaagAGGGTGCCCCGAGATTTAATTCTGAAAATTTCCTCGAGGAGCGAGATCCCCAATATGATGCCATGCTTAGTCAGATGGTGGGTAGAATCAGATCTAAGTC
tattaat putative branch site (score: 2)
ttctttttctttgttt putative PPT
tttttctttgtttaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aaaacctgtagaaaatatggacaaccatggaataggaatagtaagatttaaaattttgattccatttgtattaattggtgattctttttctttgtttaagAGGGTGCCCCGAGATTTAATTCTGAAAATTTCCTCGAGGAGCGAGATCCCCAATATGATGCCATGCTTAGTCAGATGGTGGGTAGAATCAGATCTAAGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
aaaacct
- - - - -agaaaat
- - - - - - - - - - acaacca
- - - - - - - - - - - - - - - - -aggaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatttg